Trouble installing rgdal

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Trouble installing rgdal

Thomas Adams-2
Hi all,

I have searched the internet and have spent a few days trying to get to the
problem when I try to install rgdal into my Ubuntu 18.04 system. I have
done this many times previously, but cannot seem to track down what I am
doing wrong now. I have tried a forced install from sources with and
without dependencies. Below is what I get. Any help is appreciated.

Tom

> install.packages("rgdal")
Installing package into ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
==================================================
downloaded 2.2 MB

* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
** using staged installation
configure: R_HOME: /usr/local/lib/R
configure: CC: gcc
configure: CXX: g++ -std=gnu++11
configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
configure: CXX is: g++ -std=gnu++11
configure: C++11 support available
configure: rgdal: 1.5-12
checking for /usr/bin/svnversion... yes
configure: svn revision: 1018
checking for gdal-config... /usr/local/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.0.0
checking GDAL version >= 1.11.4... yes
checking GDAL version <= 2.5 or >= 3.0... yes
checking GDAL: linking with --libs only... yes
checking GDAL: gdal-config data directory readable... yes
checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
configure: pkg-config proj exists, will use it
configure: PROJ version: 6.1.0
configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
configure: PROJ LIBS: -L/usr/local/lib -lproj
checking PROJ header API:... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking proj.h usability... yes
checking proj.h presence... yes
checking for proj.h... yes
checking for proj_context_create in -lproj... yes
checking Using GDAL < 3 with PROJ >= 6... no
checking PROJ version >= 4.8.0... yes
checking PROJ: proj.db found and readable... yes
configure: Package CPP flags:  -I/usr/local/include -I/usr/local/include
-DPROJ_H_API
configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib -lproj
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
gdal-bindings.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in this
scope
         OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
         ^~~~~~~~~~~~~~~~~
ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
         OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
         ^~~~~~~~~~~~~~~~~
         OSRProjVersion
/usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o' failed
make: *** [ogr_proj.o] Error 1
ERROR: compilation failed for package ‘rgdal’
* removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’

The downloaded source packages are in
‘/tmp/RtmpNkdFOf/downloaded_packages’
Warning message:
In install.packages("rgdal") :
  installation of package ‘rgdal’ had non-zero exit status


--
Thomas E Adams, III
1724 Sage Lane
Blacksburg, VA 24060
[hidden email] (personal)
[hidden email] (work)

1 (513) 739-9512 (cell)

        [[alternative HTML version deleted]]

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Re: Trouble installing rgdal

Bennet Fauber
You might try this

install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
repos="http://R-Forge.R-project.org")

as there have been recent patches to rgdal that might help that have
been incorporated there.


On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:

>
> Hi all,
>
> I have searched the internet and have spent a few days trying to get to the
> problem when I try to install rgdal into my Ubuntu 18.04 system. I have
> done this many times previously, but cannot seem to track down what I am
> doing wrong now. I have tried a forced install from sources with and
> without dependencies. Below is what I get. Any help is appreciated.
>
> Tom
>
> > install.packages("rgdal")
> Installing package into ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> (as ‘lib’ is unspecified)
> trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> ==================================================
> downloaded 2.2 MB
>
> * installing *source* package ‘rgdal’ ...
> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> ** using staged installation
> configure: R_HOME: /usr/local/lib/R
> configure: CC: gcc
> configure: CXX: g++ -std=gnu++11
> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
> configure: CXX is: g++ -std=gnu++11
> configure: C++11 support available
> configure: rgdal: 1.5-12
> checking for /usr/bin/svnversion... yes
> configure: svn revision: 1018
> checking for gdal-config... /usr/local/bin/gdal-config
> checking gdal-config usability... yes
> configure: GDAL: 3.0.0
> checking GDAL version >= 1.11.4... yes
> checking GDAL version <= 2.5 or >= 3.0... yes
> checking GDAL: linking with --libs only... yes
> checking GDAL: gdal-config data directory readable... yes
> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> configure: pkg-config proj exists, will use it
> configure: PROJ version: 6.1.0
> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> configure: PROJ LIBS: -L/usr/local/lib -lproj
> checking PROJ header API:... yes
> checking whether the C++ compiler works... yes
> checking for C++ compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ -std=gnu++11 accepts -g... yes
> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking proj.h usability... yes
> checking proj.h presence... yes
> checking for proj.h... yes
> checking for proj_context_create in -lproj... yes
> checking Using GDAL < 3 with PROJ >= 6... no
> checking PROJ version >= 4.8.0... yes
> checking PROJ: proj.db found and readable... yes
> configure: Package CPP flags:  -I/usr/local/include -I/usr/local/include
> -DPROJ_H_API
> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib -lproj
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> gdal-bindings.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
> ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in this
> scope
>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>          ^~~~~~~~~~~~~~~~~
> ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>          ^~~~~~~~~~~~~~~~~
>          OSRProjVersion
> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o' failed
> make: *** [ogr_proj.o] Error 1
> ERROR: compilation failed for package ‘rgdal’
> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>
> The downloaded source packages are in
> ‘/tmp/RtmpNkdFOf/downloaded_packages’
> Warning message:
> In install.packages("rgdal") :
>   installation of package ‘rgdal’ had non-zero exit status
>
>
> --
> Thomas E Adams, III
> 1724 Sage Lane
> Blacksburg, VA 24060
> [hidden email] (personal)
> [hidden email] (work)
>
> 1 (513) 739-9512 (cell)
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> R-sig-Geo mailing list
> [hidden email]
> https://stat.ethz.ch/mailman/listinfo/r-sig-geo

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Re: Trouble installing rgdal

Thomas Adams-2
Hi Bennet!

Thank you for your help, but I get the same error...

Tom

On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:

> You might try this
>
> install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
> repos="http://R-Forge.R-project.org")
>
> as there have been recent patches to rgdal that might help that have
> been incorporated there.
>
>
> On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
> >
> > Hi all,
> >
> > I have searched the internet and have spent a few days trying to get to
> the
> > problem when I try to install rgdal into my Ubuntu 18.04 system. I have
> > done this many times previously, but cannot seem to track down what I am
> > doing wrong now. I have tried a forced install from sources with and
> > without dependencies. Below is what I get. Any help is appreciated.
> >
> > Tom
> >
> > > install.packages("rgdal")
> > Installing package into ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> > (as ‘lib’ is unspecified)
> > trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
> > Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> > ==================================================
> > downloaded 2.2 MB
> >
> > * installing *source* package ‘rgdal’ ...
> > ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> > ** using staged installation
> > configure: R_HOME: /usr/local/lib/R
> > configure: CC: gcc
> > configure: CXX: g++ -std=gnu++11
> > configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
> > configure: CXX is: g++ -std=gnu++11
> > configure: C++11 support available
> > configure: rgdal: 1.5-12
> > checking for /usr/bin/svnversion... yes
> > configure: svn revision: 1018
> > checking for gdal-config... /usr/local/bin/gdal-config
> > checking gdal-config usability... yes
> > configure: GDAL: 3.0.0
> > checking GDAL version >= 1.11.4... yes
> > checking GDAL version <= 2.5 or >= 3.0... yes
> > checking GDAL: linking with --libs only... yes
> > checking GDAL: gdal-config data directory readable... yes
> > checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> > configure: pkg-config proj exists, will use it
> > configure: PROJ version: 6.1.0
> > configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> > configure: PROJ LIBS: -L/usr/local/lib -lproj
> > checking PROJ header API:... yes
> > checking whether the C++ compiler works... yes
> > checking for C++ compiler default output file name... a.out
> > checking for suffix of executables...
> > checking whether we are cross compiling... no
> > checking for suffix of object files... o
> > checking whether we are using the GNU C++ compiler... yes
> > checking whether g++ -std=gnu++11 accepts -g... yes
> > checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> > checking for grep that handles long lines and -e... /bin/grep
> > checking for egrep... /bin/grep -E
> > checking for ANSI C header files... yes
> > checking for sys/types.h... yes
> > checking for sys/stat.h... yes
> > checking for stdlib.h... yes
> > checking for string.h... yes
> > checking for memory.h... yes
> > checking for strings.h... yes
> > checking for inttypes.h... yes
> > checking for stdint.h... yes
> > checking for unistd.h... yes
> > checking proj.h usability... yes
> > checking proj.h presence... yes
> > checking for proj.h... yes
> > checking for proj_context_create in -lproj... yes
> > checking Using GDAL < 3 with PROJ >= 6... no
> > checking PROJ version >= 4.8.0... yes
> > checking PROJ: proj.db found and readable... yes
> > configure: Package CPP flags:  -I/usr/local/include -I/usr/local/include
> > -DPROJ_H_API
> > configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib -lproj
> > configure: creating ./config.status
> > config.status: creating src/Makevars
> > ** libs
> > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> > gdal-bindings.o
> > gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> > gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> > gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
> > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> > gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
> > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> -I/usr/local/include
> > -I/usr/local/include -DPROJ_H_API
> > -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> > -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> > ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
> > ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in this
> > scope
> >          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >          ^~~~~~~~~~~~~~~~~
> > ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
> >          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >          ^~~~~~~~~~~~~~~~~
> >          OSRProjVersion
> > /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o' failed
> > make: *** [ogr_proj.o] Error 1
> > ERROR: compilation failed for package ‘rgdal’
> > * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >
> > The downloaded source packages are in
> > ‘/tmp/RtmpNkdFOf/downloaded_packages’
> > Warning message:
> > In install.packages("rgdal") :
> >   installation of package ‘rgdal’ had non-zero exit status
> >
> >
> > --
> > Thomas E Adams, III
> > 1724 Sage Lane
> > Blacksburg, VA 24060
> > [hidden email] (personal)
> > [hidden email] (work)
> >
> > 1 (513) 739-9512 (cell)
> >
> >         [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > R-sig-Geo mailing list
> > [hidden email]
> > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>


--
Thomas E Adams, III
1724 Sage Lane
Blacksburg, VA 24060
[hidden email] (personal)
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Re: Trouble installing rgdal

Roger Bivand
Administrator
On Thu, 2 Jul 2020, Thomas Adams wrote:

> Hi Bennet!
>
> Thank you for your help, but I get the same error...

Tom,

Once rgdal revision 1029 completes building (check first) on:

https://r-forge.r-project.org/R/?group_id=884

please re-try. The missing function is not in the GDAL 3.0.0 headers, but
is in the 3.0.1 headers. I've modified the check so as not to try for just
>= 3 to >= 3.0.1.

Roger

>
> Tom
>
> On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:
>
>> You might try this
>>
>> install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
>> repos="http://R-Forge.R-project.org")
>>
>> as there have been recent patches to rgdal that might help that have
>> been incorporated there.
>>
>>
>> On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
>>>
>>> Hi all,
>>>
>>> I have searched the internet and have spent a few days trying to get to
>> the
>>> problem when I try to install rgdal into my Ubuntu 18.04 system. I have
>>> done this many times previously, but cannot seem to track down what I am
>>> doing wrong now. I have tried a forced install from sources with and
>>> without dependencies. Below is what I get. Any help is appreciated.
>>>
>>> Tom
>>>
>>>> install.packages("rgdal")
>>> Installing package into ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
>>> (as ‘lib’ is unspecified)
>>> trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
>>> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
>>> ==================================================
>>> downloaded 2.2 MB
>>>
>>> * installing *source* package ‘rgdal’ ...
>>> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
>>> ** using staged installation
>>> configure: R_HOME: /usr/local/lib/R
>>> configure: CC: gcc
>>> configure: CXX: g++ -std=gnu++11
>>> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
>>> configure: CXX is: g++ -std=gnu++11
>>> configure: C++11 support available
>>> configure: rgdal: 1.5-12
>>> checking for /usr/bin/svnversion... yes
>>> configure: svn revision: 1018
>>> checking for gdal-config... /usr/local/bin/gdal-config
>>> checking gdal-config usability... yes
>>> configure: GDAL: 3.0.0
>>> checking GDAL version >= 1.11.4... yes
>>> checking GDAL version <= 2.5 or >= 3.0... yes
>>> checking GDAL: linking with --libs only... yes
>>> checking GDAL: gdal-config data directory readable... yes
>>> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
>>> configure: pkg-config proj exists, will use it
>>> configure: PROJ version: 6.1.0
>>> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
>>> configure: PROJ LIBS: -L/usr/local/lib -lproj
>>> checking PROJ header API:... yes
>>> checking whether the C++ compiler works... yes
>>> checking for C++ compiler default output file name... a.out
>>> checking for suffix of executables...
>>> checking whether we are cross compiling... no
>>> checking for suffix of object files... o
>>> checking whether we are using the GNU C++ compiler... yes
>>> checking whether g++ -std=gnu++11 accepts -g... yes
>>> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
>>> checking for grep that handles long lines and -e... /bin/grep
>>> checking for egrep... /bin/grep -E
>>> checking for ANSI C header files... yes
>>> checking for sys/types.h... yes
>>> checking for sys/stat.h... yes
>>> checking for stdlib.h... yes
>>> checking for string.h... yes
>>> checking for memory.h... yes
>>> checking for strings.h... yes
>>> checking for inttypes.h... yes
>>> checking for stdint.h... yes
>>> checking for unistd.h... yes
>>> checking proj.h usability... yes
>>> checking proj.h presence... yes
>>> checking for proj.h... yes
>>> checking for proj_context_create in -lproj... yes
>>> checking Using GDAL < 3 with PROJ >= 6... no
>>> checking PROJ version >= 4.8.0... yes
>>> checking PROJ: proj.db found and readable... yes
>>> configure: Package CPP flags:  -I/usr/local/include -I/usr/local/include
>>> -DPROJ_H_API
>>> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib -lproj
>>> configure: creating ./config.status
>>> config.status: creating src/Makevars
>>> ** libs
>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>> -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>> -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
>>> gdal-bindings.o
>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>> -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>> -I/usr/local/include
>>> -I/usr/local/include -DPROJ_H_API
>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
>>> ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
>>> ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in this
>>> scope
>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>          ^~~~~~~~~~~~~~~~~
>>> ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>          ^~~~~~~~~~~~~~~~~
>>>          OSRProjVersion
>>> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o' failed
>>> make: *** [ogr_proj.o] Error 1
>>> ERROR: compilation failed for package ‘rgdal’
>>> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>>
>>> The downloaded source packages are in
>>> ‘/tmp/RtmpNkdFOf/downloaded_packages’
>>> Warning message:
>>> In install.packages("rgdal") :
>>>   installation of package ‘rgdal’ had non-zero exit status
>>>
>>>
>>> --
>>> Thomas E Adams, III
>>> 1724 Sage Lane
>>> Blacksburg, VA 24060
>>> [hidden email] (personal)
>>> [hidden email] (work)
>>>
>>> 1 (513) 739-9512 (cell)
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> R-sig-Geo mailing list
>>> [hidden email]
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>
>
>
>
--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: [hidden email]
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
_______________________________________________
R-sig-Geo mailing list
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Roger Bivand
Department of Economics
Norwegian School of Economics
Helleveien 30
N-5045 Bergen, Norway
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Re: Trouble installing rgdal

Thomas Adams-2
Roger,

Thank you so much; after downloading the *.tar.gz file, the that did the
trick, using:

sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
rgdal_1.5-13.tar.gz

Best regards!
Tom


On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]> wrote:

> On Thu, 2 Jul 2020, Thomas Adams wrote:
>
> > Hi Bennet!
> >
> > Thank you for your help, but I get the same error...
>
> Tom,
>
> Once rgdal revision 1029 completes building (check first) on:
>
> https://r-forge.r-project.org/R/?group_id=884
>
> please re-try. The missing function is not in the GDAL 3.0.0 headers, but
> is in the 3.0.1 headers. I've modified the check so as not to try for just
> >= 3 to >= 3.0.1.
>
> Roger
>
> >
> > Tom
> >
> > On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:
> >
> >> You might try this
> >>
> >> install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
> >> repos="http://R-Forge.R-project.org")
> >>
> >> as there have been recent patches to rgdal that might help that have
> >> been incorporated there.
> >>
> >>
> >> On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
> >>>
> >>> Hi all,
> >>>
> >>> I have searched the internet and have spent a few days trying to get to
> >> the
> >>> problem when I try to install rgdal into my Ubuntu 18.04 system. I have
> >>> done this many times previously, but cannot seem to track down what I
> am
> >>> doing wrong now. I have tried a forced install from sources with and
> >>> without dependencies. Below is what I get. Any help is appreciated.
> >>>
> >>> Tom
> >>>
> >>>> install.packages("rgdal")
> >>> Installing package into
> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> >>> (as ‘lib’ is unspecified)
> >>> trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
> >>> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> >>> ==================================================
> >>> downloaded 2.2 MB
> >>>
> >>> * installing *source* package ‘rgdal’ ...
> >>> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> >>> ** using staged installation
> >>> configure: R_HOME: /usr/local/lib/R
> >>> configure: CC: gcc
> >>> configure: CXX: g++ -std=gnu++11
> >>> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
> >>> configure: CXX is: g++ -std=gnu++11
> >>> configure: C++11 support available
> >>> configure: rgdal: 1.5-12
> >>> checking for /usr/bin/svnversion... yes
> >>> configure: svn revision: 1018
> >>> checking for gdal-config... /usr/local/bin/gdal-config
> >>> checking gdal-config usability... yes
> >>> configure: GDAL: 3.0.0
> >>> checking GDAL version >= 1.11.4... yes
> >>> checking GDAL version <= 2.5 or >= 3.0... yes
> >>> checking GDAL: linking with --libs only... yes
> >>> checking GDAL: gdal-config data directory readable... yes
> >>> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> >>> configure: pkg-config proj exists, will use it
> >>> configure: PROJ version: 6.1.0
> >>> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> >>> configure: PROJ LIBS: -L/usr/local/lib -lproj
> >>> checking PROJ header API:... yes
> >>> checking whether the C++ compiler works... yes
> >>> checking for C++ compiler default output file name... a.out
> >>> checking for suffix of executables...
> >>> checking whether we are cross compiling... no
> >>> checking for suffix of object files... o
> >>> checking whether we are using the GNU C++ compiler... yes
> >>> checking whether g++ -std=gnu++11 accepts -g... yes
> >>> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> >>> checking for grep that handles long lines and -e... /bin/grep
> >>> checking for egrep... /bin/grep -E
> >>> checking for ANSI C header files... yes
> >>> checking for sys/types.h... yes
> >>> checking for sys/stat.h... yes
> >>> checking for stdlib.h... yes
> >>> checking for string.h... yes
> >>> checking for memory.h... yes
> >>> checking for strings.h... yes
> >>> checking for inttypes.h... yes
> >>> checking for stdint.h... yes
> >>> checking for unistd.h... yes
> >>> checking proj.h usability... yes
> >>> checking proj.h presence... yes
> >>> checking for proj.h... yes
> >>> checking for proj_context_create in -lproj... yes
> >>> checking Using GDAL < 3 with PROJ >= 6... no
> >>> checking PROJ version >= 4.8.0... yes
> >>> checking PROJ: proj.db found and readable... yes
> >>> configure: Package CPP flags:  -I/usr/local/include
> -I/usr/local/include
> >>> -DPROJ_H_API
> >>> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
> -lproj
> >>> configure: creating ./config.status
> >>> config.status: creating src/Makevars
> >>> ** libs
> >>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >> -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> >>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >> -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> >>> gdal-bindings.o
> >>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> >>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> >>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
> >>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >> -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> >>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
> ogr_polygons.o
> >>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >> -I/usr/local/include
> >>> -I/usr/local/include -DPROJ_H_API
> >>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> >>> ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
> >>> ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in this
> >>> scope
> >>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>          ^~~~~~~~~~~~~~~~~
> >>> ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
> >>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>          ^~~~~~~~~~~~~~~~~
> >>>          OSRProjVersion
> >>> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
> failed
> >>> make: *** [ogr_proj.o] Error 1
> >>> ERROR: compilation failed for package ‘rgdal’
> >>> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>>
> >>> The downloaded source packages are in
> >>> ‘/tmp/RtmpNkdFOf/downloaded_packages’
> >>> Warning message:
> >>> In install.packages("rgdal") :
> >>>   installation of package ‘rgdal’ had non-zero exit status
> >>>
> >>>
> >>> --
> >>> Thomas E Adams, III
> >>> 1724 Sage Lane
> >>> Blacksburg, VA 24060
> >>> [hidden email] (personal)
> >>> [hidden email] (work)
> >>>
> >>> 1 (513) 739-9512 (cell)
> >>>
> >>>         [[alternative HTML version deleted]]
> >>>
> >>> _______________________________________________
> >>> R-sig-Geo mailing list
> >>> [hidden email]
> >>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >>
> >
> >
> >
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: [hidden email]
> https://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en



--
Thomas E Adams, III
1724 Sage Lane
Blacksburg, VA 24060
[hidden email] (personal)
[hidden email] (work)

1 (513) 739-9512 (cell)

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Re: Trouble installing rgdal

Roger Bivand
Administrator
On Thu, 2 Jul 2020, Thomas Adams wrote:

> Roger,
>
> Thank you so much; after downloading the *.tar.gz file, the that did the
> trick, using:
>
> sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
> rgdal_1.5-13.tar.gz

Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
--configure-args=--with-proj_api="proj_api.h", which is only needed if
GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if GDAL
>= 3 && PROJ >= 6 with this configure argument, as it is only a
work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested in
that setting.

Thanks for reporting back!

Roger

>
> Best regards!
> Tom
>
>
> On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]> wrote:
>
>> On Thu, 2 Jul 2020, Thomas Adams wrote:
>>
>>> Hi Bennet!
>>>
>>> Thank you for your help, but I get the same error...
>>
>> Tom,
>>
>> Once rgdal revision 1029 completes building (check first) on:
>>
>> https://r-forge.r-project.org/R/?group_id=884
>>
>> please re-try. The missing function is not in the GDAL 3.0.0 headers, but
>> is in the 3.0.1 headers. I've modified the check so as not to try for just
>>> = 3 to >= 3.0.1.
>>
>> Roger
>>
>>>
>>> Tom
>>>
>>> On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:
>>>
>>>> You might try this
>>>>
>>>> install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
>>>> repos="http://R-Forge.R-project.org")
>>>>
>>>> as there have been recent patches to rgdal that might help that have
>>>> been incorporated there.
>>>>
>>>>
>>>> On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
>>>>>
>>>>> Hi all,
>>>>>
>>>>> I have searched the internet and have spent a few days trying to get to
>>>> the
>>>>> problem when I try to install rgdal into my Ubuntu 18.04 system. I have
>>>>> done this many times previously, but cannot seem to track down what I
>> am
>>>>> doing wrong now. I have tried a forced install from sources with and
>>>>> without dependencies. Below is what I get. Any help is appreciated.
>>>>>
>>>>> Tom
>>>>>
>>>>>> install.packages("rgdal")
>>>>> Installing package into
>> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
>>>>> (as ‘lib’ is unspecified)
>>>>> trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
>>>>> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
>>>>> ==================================================
>>>>> downloaded 2.2 MB
>>>>>
>>>>> * installing *source* package ‘rgdal’ ...
>>>>> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
>>>>> ** using staged installation
>>>>> configure: R_HOME: /usr/local/lib/R
>>>>> configure: CC: gcc
>>>>> configure: CXX: g++ -std=gnu++11
>>>>> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
>>>>> configure: CXX is: g++ -std=gnu++11
>>>>> configure: C++11 support available
>>>>> configure: rgdal: 1.5-12
>>>>> checking for /usr/bin/svnversion... yes
>>>>> configure: svn revision: 1018
>>>>> checking for gdal-config... /usr/local/bin/gdal-config
>>>>> checking gdal-config usability... yes
>>>>> configure: GDAL: 3.0.0
>>>>> checking GDAL version >= 1.11.4... yes
>>>>> checking GDAL version <= 2.5 or >= 3.0... yes
>>>>> checking GDAL: linking with --libs only... yes
>>>>> checking GDAL: gdal-config data directory readable... yes
>>>>> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
>>>>> configure: pkg-config proj exists, will use it
>>>>> configure: PROJ version: 6.1.0
>>>>> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
>>>>> configure: PROJ LIBS: -L/usr/local/lib -lproj
>>>>> checking PROJ header API:... yes
>>>>> checking whether the C++ compiler works... yes
>>>>> checking for C++ compiler default output file name... a.out
>>>>> checking for suffix of executables...
>>>>> checking whether we are cross compiling... no
>>>>> checking for suffix of object files... o
>>>>> checking whether we are using the GNU C++ compiler... yes
>>>>> checking whether g++ -std=gnu++11 accepts -g... yes
>>>>> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
>>>>> checking for grep that handles long lines and -e... /bin/grep
>>>>> checking for egrep... /bin/grep -E
>>>>> checking for ANSI C header files... yes
>>>>> checking for sys/types.h... yes
>>>>> checking for sys/stat.h... yes
>>>>> checking for stdlib.h... yes
>>>>> checking for string.h... yes
>>>>> checking for memory.h... yes
>>>>> checking for strings.h... yes
>>>>> checking for inttypes.h... yes
>>>>> checking for stdint.h... yes
>>>>> checking for unistd.h... yes
>>>>> checking proj.h usability... yes
>>>>> checking proj.h presence... yes
>>>>> checking for proj.h... yes
>>>>> checking for proj_context_create in -lproj... yes
>>>>> checking Using GDAL < 3 with PROJ >= 6... no
>>>>> checking PROJ version >= 4.8.0... yes
>>>>> checking PROJ: proj.db found and readable... yes
>>>>> configure: Package CPP flags:  -I/usr/local/include
>> -I/usr/local/include
>>>>> -DPROJ_H_API
>>>>> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
>> -lproj
>>>>> configure: creating ./config.status
>>>>> config.status: creating src/Makevars
>>>>> ** libs
>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>> -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>> -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
>>>>> gdal-bindings.o
>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>> -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
>> ogr_polygons.o
>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>> -I/usr/local/include
>>>>> -I/usr/local/include -DPROJ_H_API
>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
>>>>> ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
>>>>> ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in this
>>>>> scope
>>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>          ^~~~~~~~~~~~~~~~~
>>>>> ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
>>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>          ^~~~~~~~~~~~~~~~~
>>>>>          OSRProjVersion
>>>>> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
>> failed
>>>>> make: *** [ogr_proj.o] Error 1
>>>>> ERROR: compilation failed for package ‘rgdal’
>>>>> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>>>>
>>>>> The downloaded source packages are in
>>>>> ‘/tmp/RtmpNkdFOf/downloaded_packages’
>>>>> Warning message:
>>>>> In install.packages("rgdal") :
>>>>>   installation of package ‘rgdal’ had non-zero exit status
>>>>>
>>>>>
>>>>> --
>>>>> Thomas E Adams, III
>>>>> 1724 Sage Lane
>>>>> Blacksburg, VA 24060
>>>>> [hidden email] (personal)
>>>>> [hidden email] (work)
>>>>>
>>>>> 1 (513) 739-9512 (cell)
>>>>>
>>>>>         [[alternative HTML version deleted]]
>>>>>
>>>>> _______________________________________________
>>>>> R-sig-Geo mailing list
>>>>> [hidden email]
>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>>>
>>>
>>>
>>>
>>
>> --
>> Roger Bivand
>> Department of Economics, Norwegian School of Economics,
>> Helleveien 30, N-5045 Bergen, Norway.
>> voice: +47 55 95 93 55; e-mail: [hidden email]
>> https://orcid.org/0000-0003-2392-6140
>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>
>
>
>
--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: [hidden email]
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
_______________________________________________
R-sig-Geo mailing list
[hidden email]
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Roger Bivand
Department of Economics
Norwegian School of Economics
Helleveien 30
N-5045 Bergen, Norway
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Re: Trouble installing rgdal

Thomas Adams-2
Thank you, Roger! I'll re-install without using
--configure-args=--with-proj_api="proj_api.h

Best,
Tom

On Fri, Jul 3, 2020 at 5:45 AM Roger Bivand <[hidden email]> wrote:

> On Thu, 2 Jul 2020, Thomas Adams wrote:
>
> > Roger,
> >
> > Thank you so much; after downloading the *.tar.gz file, the that did the
> > trick, using:
> >
> > sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
> > rgdal_1.5-13.tar.gz
>
> Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
> --configure-args=--with-proj_api="proj_api.h", which is only needed if
> GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if GDAL
> >= 3 && PROJ >= 6 with this configure argument, as it is only a
> work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested in
> that setting.
>
> Thanks for reporting back!
>
> Roger
>
> >
> > Best regards!
> > Tom
> >
> >
> > On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]> wrote:
> >
> >> On Thu, 2 Jul 2020, Thomas Adams wrote:
> >>
> >>> Hi Bennet!
> >>>
> >>> Thank you for your help, but I get the same error...
> >>
> >> Tom,
> >>
> >> Once rgdal revision 1029 completes building (check first) on:
> >>
> >> https://r-forge.r-project.org/R/?group_id=884
> >>
> >> please re-try. The missing function is not in the GDAL 3.0.0 headers,
> but
> >> is in the 3.0.1 headers. I've modified the check so as not to try for
> just
> >>> = 3 to >= 3.0.1.
> >>
> >> Roger
> >>
> >>>
> >>> Tom
> >>>
> >>> On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:
> >>>
> >>>> You might try this
> >>>>
> >>>> install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
> >>>> repos="http://R-Forge.R-project.org")
> >>>>
> >>>> as there have been recent patches to rgdal that might help that have
> >>>> been incorporated there.
> >>>>
> >>>>
> >>>> On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
> >>>>>
> >>>>> Hi all,
> >>>>>
> >>>>> I have searched the internet and have spent a few days trying to get
> to
> >>>> the
> >>>>> problem when I try to install rgdal into my Ubuntu 18.04 system. I
> have
> >>>>> done this many times previously, but cannot seem to track down what I
> >> am
> >>>>> doing wrong now. I have tried a forced install from sources with and
> >>>>> without dependencies. Below is what I get. Any help is appreciated.
> >>>>>
> >>>>> Tom
> >>>>>
> >>>>>> install.packages("rgdal")
> >>>>> Installing package into
> >> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> >>>>> (as ‘lib’ is unspecified)
> >>>>> trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
> >>>>> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> >>>>> ==================================================
> >>>>> downloaded 2.2 MB
> >>>>>
> >>>>> * installing *source* package ‘rgdal’ ...
> >>>>> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> >>>>> ** using staged installation
> >>>>> configure: R_HOME: /usr/local/lib/R
> >>>>> configure: CC: gcc
> >>>>> configure: CXX: g++ -std=gnu++11
> >>>>> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
> >>>>> configure: CXX is: g++ -std=gnu++11
> >>>>> configure: C++11 support available
> >>>>> configure: rgdal: 1.5-12
> >>>>> checking for /usr/bin/svnversion... yes
> >>>>> configure: svn revision: 1018
> >>>>> checking for gdal-config... /usr/local/bin/gdal-config
> >>>>> checking gdal-config usability... yes
> >>>>> configure: GDAL: 3.0.0
> >>>>> checking GDAL version >= 1.11.4... yes
> >>>>> checking GDAL version <= 2.5 or >= 3.0... yes
> >>>>> checking GDAL: linking with --libs only... yes
> >>>>> checking GDAL: gdal-config data directory readable... yes
> >>>>> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> >>>>> configure: pkg-config proj exists, will use it
> >>>>> configure: PROJ version: 6.1.0
> >>>>> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> >>>>> configure: PROJ LIBS: -L/usr/local/lib -lproj
> >>>>> checking PROJ header API:... yes
> >>>>> checking whether the C++ compiler works... yes
> >>>>> checking for C++ compiler default output file name... a.out
> >>>>> checking for suffix of executables...
> >>>>> checking whether we are cross compiling... no
> >>>>> checking for suffix of object files... o
> >>>>> checking whether we are using the GNU C++ compiler... yes
> >>>>> checking whether g++ -std=gnu++11 accepts -g... yes
> >>>>> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> >>>>> checking for grep that handles long lines and -e... /bin/grep
> >>>>> checking for egrep... /bin/grep -E
> >>>>> checking for ANSI C header files... yes
> >>>>> checking for sys/types.h... yes
> >>>>> checking for sys/stat.h... yes
> >>>>> checking for stdlib.h... yes
> >>>>> checking for string.h... yes
> >>>>> checking for memory.h... yes
> >>>>> checking for strings.h... yes
> >>>>> checking for inttypes.h... yes
> >>>>> checking for stdint.h... yes
> >>>>> checking for unistd.h... yes
> >>>>> checking proj.h usability... yes
> >>>>> checking proj.h presence... yes
> >>>>> checking for proj.h... yes
> >>>>> checking for proj_context_create in -lproj... yes
> >>>>> checking Using GDAL < 3 with PROJ >= 6... no
> >>>>> checking PROJ version >= 4.8.0... yes
> >>>>> checking PROJ: proj.db found and readable... yes
> >>>>> configure: Package CPP flags:  -I/usr/local/include
> >> -I/usr/local/include
> >>>>> -DPROJ_H_API
> >>>>> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
> >> -lproj
> >>>>> configure: creating ./config.status
> >>>>> config.status: creating src/Makevars
> >>>>> ** libs
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> >>>>> gdal-bindings.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o
> local_stubs.o
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
> >> ogr_polygons.o
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> >>>>> ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
> >>>>> ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in
> this
> >>>>> scope
> >>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>          ^~~~~~~~~~~~~~~~~
> >>>>> ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
> >>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>          ^~~~~~~~~~~~~~~~~
> >>>>>          OSRProjVersion
> >>>>> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
> >> failed
> >>>>> make: *** [ogr_proj.o] Error 1
> >>>>> ERROR: compilation failed for package ‘rgdal’
> >>>>> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>>>>
> >>>>> The downloaded source packages are in
> >>>>> ‘/tmp/RtmpNkdFOf/downloaded_packages’
> >>>>> Warning message:
> >>>>> In install.packages("rgdal") :
> >>>>>   installation of package ‘rgdal’ had non-zero exit status
> >>>>>
> >>>>>
> >>>>> --
> >>>>> Thomas E Adams, III
> >>>>> 1724 Sage Lane
> >>>>> Blacksburg, VA 24060
> >>>>> [hidden email] (personal)
> >>>>> [hidden email] (work)
> >>>>>
> >>>>> 1 (513) 739-9512 (cell)
> >>>>>
> >>>>>         [[alternative HTML version deleted]]
> >>>>>
> >>>>> _______________________________________________
> >>>>> R-sig-Geo mailing list
> >>>>> [hidden email]
> >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >>>>
> >>>
> >>>
> >>>
> >>
> >> --
> >> Roger Bivand
> >> Department of Economics, Norwegian School of Economics,
> >> Helleveien 30, N-5045 Bergen, Norway.
> >> voice: +47 55 95 93 55; e-mail: [hidden email]
> >> https://orcid.org/0000-0003-2392-6140
> >> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
> >
> >
> >
> >
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: [hidden email]
> https://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en



--
Thomas E Adams, III
1724 Sage Lane
Blacksburg, VA 24060
[hidden email] (personal)
[hidden email] (work)

1 (513) 739-9512 (cell)

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Re: Trouble installing rgdal

Thomas Adams-2
In reply to this post by Roger Bivand
Hi Roger,

I just tried re-installing withou using the argument and got this:

teaiii@teaiii-Leopard-WS:~$ sudo R CMD INSTALL rgdal_1.5-13.tar.gz
* installing to library ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
* installing *source* package ‘rgdal’ ...
** using staged installation
configure: R_HOME: /usr/local/lib/R
configure: CC: gcc
configure: CXX: g++ -std=gnu++11
configure: CFLAGS: -g -O2
configure: CPPFLAGS: -I/usr/local/include
configure: CXXFLAGS: -g -O2
configure: LDFLAGS: -L/usr/local/lib
configure: LDFLAGS: -L/usr/local/lib
configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
configure: CXX is: g++ -std=gnu++11
configure: C++11 support available
configure: rgdal: 1.5-13
checking for /usr/bin/svnversion... yes
cat: inst/SVN_VERSION: No such file or directory
configure: svn revision:
checking for gdal-config... /usr/local/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.0.0
checking GDAL version >= 1.11.4... yes
checking GDAL version <= 2.5 or >= 3.0... yes
checking GDAL: linking with --libs only... yes
checking GDAL: gdal-config data directory readable... yes
checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
configure: pkg-config proj exists, will use it
configure: PROJ version: 6.1.0
configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
configure: PROJ LIBS: -L/usr/local/lib -lproj
checking PROJ header API:... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking proj.h usability... yes
checking proj.h presence... yes
checking for proj.h... yes
checking for proj_context_create in -lproj... yes
checking Using GDAL < 3 with PROJ >= 6... no
checking PROJ version >= 4.8.0... yes
checking PROJ: proj.db found and readable... yes
configure: Package CPP flags:  -I/usr/local/include -I/usr/local/include
-DPROJ_H_API
configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib -lproj
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
gdal-bindings.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogrdrivers.cpp -o ogrdrivers.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c ogrsource.cpp -o ogrsource.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
-I/usr/local/include -DPROJ_H_API
-I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
-I/usr/local/include   -fpic  -g -O2  -c proj6.cpp -o proj6.o
proj6.cpp: In function ‘SEXPREC* transform_ng(SEXP, SEXP, SEXP, SEXP, SEXP,
SEXP, SEXP)’:
proj6.cpp:521:29: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
in this scope
         if ((pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
source_crs,
                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
proj6.cpp:521:29: note: suggested alternative: ‘proj_create_crs_to_crs’
         if ((pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
source_crs,
                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                             proj_create_crs_to_crs
proj6.cpp: In function ‘SEXPREC* project_ng_coordOp(SEXP, SEXP)’:
proj6.cpp:704:33: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
in this scope
     if (use_inv) pj_transform =
proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
proj6.cpp:704:33: note: suggested alternative: ‘proj_create_crs_to_crs’
     if (use_inv) pj_transform =
proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                 proj_create_crs_to_crs
proj6.cpp:706:25: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
in this scope
     else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
source_crs,
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
proj6.cpp:706:25: note: suggested alternative: ‘proj_create_crs_to_crs’
     else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
source_crs,
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                         proj_create_crs_to_crs
/usr/local/lib/R/etc/Makeconf:176: recipe for target 'proj6.o' failed
make: *** [proj6.o] Error 1
ERROR: compilation failed for package ‘rgdal’
* removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
* restoring previous ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’

On Fri, Jul 3, 2020 at 5:45 AM Roger Bivand <[hidden email]> wrote:

> On Thu, 2 Jul 2020, Thomas Adams wrote:
>
> > Roger,
> >
> > Thank you so much; after downloading the *.tar.gz file, the that did the
> > trick, using:
> >
> > sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
> > rgdal_1.5-13.tar.gz
>
> Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
> --configure-args=--with-proj_api="proj_api.h", which is only needed if
> GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if GDAL
> >= 3 && PROJ >= 6 with this configure argument, as it is only a
> work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested in
> that setting.
>
> Thanks for reporting back!
>
> Roger
>
> >
> > Best regards!
> > Tom
> >
> >
> > On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]> wrote:
> >
> >> On Thu, 2 Jul 2020, Thomas Adams wrote:
> >>
> >>> Hi Bennet!
> >>>
> >>> Thank you for your help, but I get the same error...
> >>
> >> Tom,
> >>
> >> Once rgdal revision 1029 completes building (check first) on:
> >>
> >> https://r-forge.r-project.org/R/?group_id=884
> >>
> >> please re-try. The missing function is not in the GDAL 3.0.0 headers,
> but
> >> is in the 3.0.1 headers. I've modified the check so as not to try for
> just
> >>> = 3 to >= 3.0.1.
> >>
> >> Roger
> >>
> >>>
> >>> Tom
> >>>
> >>> On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:
> >>>
> >>>> You might try this
> >>>>
> >>>> install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
> >>>> repos="http://R-Forge.R-project.org")
> >>>>
> >>>> as there have been recent patches to rgdal that might help that have
> >>>> been incorporated there.
> >>>>
> >>>>
> >>>> On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
> >>>>>
> >>>>> Hi all,
> >>>>>
> >>>>> I have searched the internet and have spent a few days trying to get
> to
> >>>> the
> >>>>> problem when I try to install rgdal into my Ubuntu 18.04 system. I
> have
> >>>>> done this many times previously, but cannot seem to track down what I
> >> am
> >>>>> doing wrong now. I have tried a forced install from sources with and
> >>>>> without dependencies. Below is what I get. Any help is appreciated.
> >>>>>
> >>>>> Tom
> >>>>>
> >>>>>> install.packages("rgdal")
> >>>>> Installing package into
> >> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> >>>>> (as ‘lib’ is unspecified)
> >>>>> trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
> >>>>> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> >>>>> ==================================================
> >>>>> downloaded 2.2 MB
> >>>>>
> >>>>> * installing *source* package ‘rgdal’ ...
> >>>>> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> >>>>> ** using staged installation
> >>>>> configure: R_HOME: /usr/local/lib/R
> >>>>> configure: CC: gcc
> >>>>> configure: CXX: g++ -std=gnu++11
> >>>>> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
> >>>>> configure: CXX is: g++ -std=gnu++11
> >>>>> configure: C++11 support available
> >>>>> configure: rgdal: 1.5-12
> >>>>> checking for /usr/bin/svnversion... yes
> >>>>> configure: svn revision: 1018
> >>>>> checking for gdal-config... /usr/local/bin/gdal-config
> >>>>> checking gdal-config usability... yes
> >>>>> configure: GDAL: 3.0.0
> >>>>> checking GDAL version >= 1.11.4... yes
> >>>>> checking GDAL version <= 2.5 or >= 3.0... yes
> >>>>> checking GDAL: linking with --libs only... yes
> >>>>> checking GDAL: gdal-config data directory readable... yes
> >>>>> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> >>>>> configure: pkg-config proj exists, will use it
> >>>>> configure: PROJ version: 6.1.0
> >>>>> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> >>>>> configure: PROJ LIBS: -L/usr/local/lib -lproj
> >>>>> checking PROJ header API:... yes
> >>>>> checking whether the C++ compiler works... yes
> >>>>> checking for C++ compiler default output file name... a.out
> >>>>> checking for suffix of executables...
> >>>>> checking whether we are cross compiling... no
> >>>>> checking for suffix of object files... o
> >>>>> checking whether we are using the GNU C++ compiler... yes
> >>>>> checking whether g++ -std=gnu++11 accepts -g... yes
> >>>>> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> >>>>> checking for grep that handles long lines and -e... /bin/grep
> >>>>> checking for egrep... /bin/grep -E
> >>>>> checking for ANSI C header files... yes
> >>>>> checking for sys/types.h... yes
> >>>>> checking for sys/stat.h... yes
> >>>>> checking for stdlib.h... yes
> >>>>> checking for string.h... yes
> >>>>> checking for memory.h... yes
> >>>>> checking for strings.h... yes
> >>>>> checking for inttypes.h... yes
> >>>>> checking for stdint.h... yes
> >>>>> checking for unistd.h... yes
> >>>>> checking proj.h usability... yes
> >>>>> checking proj.h presence... yes
> >>>>> checking for proj.h... yes
> >>>>> checking for proj_context_create in -lproj... yes
> >>>>> checking Using GDAL < 3 with PROJ >= 6... no
> >>>>> checking PROJ version >= 4.8.0... yes
> >>>>> checking PROJ: proj.db found and readable... yes
> >>>>> configure: Package CPP flags:  -I/usr/local/include
> >> -I/usr/local/include
> >>>>> -DPROJ_H_API
> >>>>> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
> >> -lproj
> >>>>> configure: creating ./config.status
> >>>>> config.status: creating src/Makevars
> >>>>> ** libs
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> >>>>> gdal-bindings.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o
> local_stubs.o
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> >>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
> >> ogr_polygons.o
> >>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>> -I/usr/local/include
> >>>>> -I/usr/local/include -DPROJ_H_API
> >>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> >>>>> ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
> >>>>> ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in
> this
> >>>>> scope
> >>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>          ^~~~~~~~~~~~~~~~~
> >>>>> ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
> >>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>          ^~~~~~~~~~~~~~~~~
> >>>>>          OSRProjVersion
> >>>>> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
> >> failed
> >>>>> make: *** [ogr_proj.o] Error 1
> >>>>> ERROR: compilation failed for package ‘rgdal’
> >>>>> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>>>>
> >>>>> The downloaded source packages are in
> >>>>> ‘/tmp/RtmpNkdFOf/downloaded_packages’
> >>>>> Warning message:
> >>>>> In install.packages("rgdal") :
> >>>>>   installation of package ‘rgdal’ had non-zero exit status
> >>>>>
> >>>>>
> >>>>> --
> >>>>> Thomas E Adams, III
> >>>>> 1724 Sage Lane
> >>>>> Blacksburg, VA 24060
> >>>>> [hidden email] (personal)
> >>>>> [hidden email] (work)
> >>>>>
> >>>>> 1 (513) 739-9512 (cell)
> >>>>>
> >>>>>         [[alternative HTML version deleted]]
> >>>>>
> >>>>> _______________________________________________
> >>>>> R-sig-Geo mailing list
> >>>>> [hidden email]
> >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >>>>
> >>>
> >>>
> >>>
> >>
> >> --
> >> Roger Bivand
> >> Department of Economics, Norwegian School of Economics,
> >> Helleveien 30, N-5045 Bergen, Norway.
> >> voice: +47 55 95 93 55; e-mail: [hidden email]
> >> https://orcid.org/0000-0003-2392-6140
> >> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
> >
> >
> >
> >
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: [hidden email]
> https://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en



--
Thomas E Adams, III
1724 Sage Lane
Blacksburg, VA 24060
[hidden email] (personal)
[hidden email] (work)

1 (513) 739-9512 (cell)

        [[alternative HTML version deleted]]

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Re: Trouble installing rgdal

Roger Bivand
Administrator
On Fri, 3 Jul 2020, Thomas Adams wrote:

> Hi Roger,
>
> I just tried re-installing withou using the argument and got this:

Very useful, thanks - painful but another case of staying too close to the
front. proj_create_crs_to_crs_from_pj() was new in PROJ 6.2.0. I'll try to
adapt to accommodate older PROJ 6.

Roger

>
> teaiii@teaiii-Leopard-WS:~$ sudo R CMD INSTALL rgdal_1.5-13.tar.gz
> * installing to library ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> * installing *source* package ‘rgdal’ ...
> ** using staged installation
> configure: R_HOME: /usr/local/lib/R
> configure: CC: gcc
> configure: CXX: g++ -std=gnu++11
> configure: CFLAGS: -g -O2
> configure: CPPFLAGS: -I/usr/local/include
> configure: CXXFLAGS: -g -O2
> configure: LDFLAGS: -L/usr/local/lib
> configure: LDFLAGS: -L/usr/local/lib
> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
> configure: CXX is: g++ -std=gnu++11
> configure: C++11 support available
> configure: rgdal: 1.5-13
> checking for /usr/bin/svnversion... yes
> cat: inst/SVN_VERSION: No such file or directory
> configure: svn revision:
> checking for gdal-config... /usr/local/bin/gdal-config
> checking gdal-config usability... yes
> configure: GDAL: 3.0.0
> checking GDAL version >= 1.11.4... yes
> checking GDAL version <= 2.5 or >= 3.0... yes
> checking GDAL: linking with --libs only... yes
> checking GDAL: gdal-config data directory readable... yes
> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> configure: pkg-config proj exists, will use it
> configure: PROJ version: 6.1.0
> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> configure: PROJ LIBS: -L/usr/local/lib -lproj
> checking PROJ header API:... yes
> checking whether the C++ compiler works... yes
> checking for C++ compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ -std=gnu++11 accepts -g... yes
> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking proj.h usability... yes
> checking proj.h presence... yes
> checking for proj.h... yes
> checking for proj_context_create in -lproj... yes
> checking Using GDAL < 3 with PROJ >= 6... no
> checking PROJ version >= 4.8.0... yes
> checking PROJ: proj.db found and readable... yes
> configure: Package CPP flags:  -I/usr/local/include -I/usr/local/include
> -DPROJ_H_API
> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib -lproj
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> gdal-bindings.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogrdrivers.cpp -o ogrdrivers.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c ogrsource.cpp -o ogrsource.o
> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> -I/usr/local/include -DPROJ_H_API
> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> -I/usr/local/include   -fpic  -g -O2  -c proj6.cpp -o proj6.o
> proj6.cpp: In function ‘SEXPREC* transform_ng(SEXP, SEXP, SEXP, SEXP, SEXP,
> SEXP, SEXP)’:
> proj6.cpp:521:29: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
> in this scope
>         if ((pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> source_crs,
>                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> proj6.cpp:521:29: note: suggested alternative: ‘proj_create_crs_to_crs’
>         if ((pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> source_crs,
>                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>                             proj_create_crs_to_crs
> proj6.cpp: In function ‘SEXPREC* project_ng_coordOp(SEXP, SEXP)’:
> proj6.cpp:704:33: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
> in this scope
>     if (use_inv) pj_transform =
> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
>                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> proj6.cpp:704:33: note: suggested alternative: ‘proj_create_crs_to_crs’
>     if (use_inv) pj_transform =
> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
>                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>                                 proj_create_crs_to_crs
> proj6.cpp:706:25: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
> in this scope
>     else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> source_crs,
>                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> proj6.cpp:706:25: note: suggested alternative: ‘proj_create_crs_to_crs’
>     else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> source_crs,
>                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>                         proj_create_crs_to_crs
> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'proj6.o' failed
> make: *** [proj6.o] Error 1
> ERROR: compilation failed for package ‘rgdal’
> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> * restoring previous ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>
> On Fri, Jul 3, 2020 at 5:45 AM Roger Bivand <[hidden email]> wrote:
>
>> On Thu, 2 Jul 2020, Thomas Adams wrote:
>>
>>> Roger,
>>>
>>> Thank you so much; after downloading the *.tar.gz file, the that did the
>>> trick, using:
>>>
>>> sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
>>> rgdal_1.5-13.tar.gz
>>
>> Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
>> --configure-args=--with-proj_api="proj_api.h", which is only needed if
>> GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if GDAL
>>> = 3 && PROJ >= 6 with this configure argument, as it is only a
>> work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested in
>> that setting.
>>
>> Thanks for reporting back!
>>
>> Roger
>>
>>>
>>> Best regards!
>>> Tom
>>>
>>>
>>> On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]> wrote:
>>>
>>>> On Thu, 2 Jul 2020, Thomas Adams wrote:
>>>>
>>>>> Hi Bennet!
>>>>>
>>>>> Thank you for your help, but I get the same error...
>>>>
>>>> Tom,
>>>>
>>>> Once rgdal revision 1029 completes building (check first) on:
>>>>
>>>> https://r-forge.r-project.org/R/?group_id=884
>>>>
>>>> please re-try. The missing function is not in the GDAL 3.0.0 headers,
>> but
>>>> is in the 3.0.1 headers. I've modified the check so as not to try for
>> just
>>>>> = 3 to >= 3.0.1.
>>>>
>>>> Roger
>>>>
>>>>>
>>>>> Tom
>>>>>
>>>>> On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:
>>>>>
>>>>>> You might try this
>>>>>>
>>>>>> install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
>>>>>> repos="http://R-Forge.R-project.org")
>>>>>>
>>>>>> as there have been recent patches to rgdal that might help that have
>>>>>> been incorporated there.
>>>>>>
>>>>>>
>>>>>> On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
>>>>>>>
>>>>>>> Hi all,
>>>>>>>
>>>>>>> I have searched the internet and have spent a few days trying to get
>> to
>>>>>> the
>>>>>>> problem when I try to install rgdal into my Ubuntu 18.04 system. I
>> have
>>>>>>> done this many times previously, but cannot seem to track down what I
>>>> am
>>>>>>> doing wrong now. I have tried a forced install from sources with and
>>>>>>> without dependencies. Below is what I get. Any help is appreciated.
>>>>>>>
>>>>>>> Tom
>>>>>>>
>>>>>>>> install.packages("rgdal")
>>>>>>> Installing package into
>>>> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
>>>>>>> (as ‘lib’ is unspecified)
>>>>>>> trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
>>>>>>> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
>>>>>>> ==================================================
>>>>>>> downloaded 2.2 MB
>>>>>>>
>>>>>>> * installing *source* package ‘rgdal’ ...
>>>>>>> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
>>>>>>> ** using staged installation
>>>>>>> configure: R_HOME: /usr/local/lib/R
>>>>>>> configure: CC: gcc
>>>>>>> configure: CXX: g++ -std=gnu++11
>>>>>>> configure: CXX11 is: g++, CXX11STD is: -std=gnu++11
>>>>>>> configure: CXX is: g++ -std=gnu++11
>>>>>>> configure: C++11 support available
>>>>>>> configure: rgdal: 1.5-12
>>>>>>> checking for /usr/bin/svnversion... yes
>>>>>>> configure: svn revision: 1018
>>>>>>> checking for gdal-config... /usr/local/bin/gdal-config
>>>>>>> checking gdal-config usability... yes
>>>>>>> configure: GDAL: 3.0.0
>>>>>>> checking GDAL version >= 1.11.4... yes
>>>>>>> checking GDAL version <= 2.5 or >= 3.0... yes
>>>>>>> checking GDAL: linking with --libs only... yes
>>>>>>> checking GDAL: gdal-config data directory readable... yes
>>>>>>> checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
>>>>>>> configure: pkg-config proj exists, will use it
>>>>>>> configure: PROJ version: 6.1.0
>>>>>>> configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
>>>>>>> configure: PROJ LIBS: -L/usr/local/lib -lproj
>>>>>>> checking PROJ header API:... yes
>>>>>>> checking whether the C++ compiler works... yes
>>>>>>> checking for C++ compiler default output file name... a.out
>>>>>>> checking for suffix of executables...
>>>>>>> checking whether we are cross compiling... no
>>>>>>> checking for suffix of object files... o
>>>>>>> checking whether we are using the GNU C++ compiler... yes
>>>>>>> checking whether g++ -std=gnu++11 accepts -g... yes
>>>>>>> checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
>>>>>>> checking for grep that handles long lines and -e... /bin/grep
>>>>>>> checking for egrep... /bin/grep -E
>>>>>>> checking for ANSI C header files... yes
>>>>>>> checking for sys/types.h... yes
>>>>>>> checking for sys/stat.h... yes
>>>>>>> checking for stdlib.h... yes
>>>>>>> checking for string.h... yes
>>>>>>> checking for memory.h... yes
>>>>>>> checking for strings.h... yes
>>>>>>> checking for inttypes.h... yes
>>>>>>> checking for stdint.h... yes
>>>>>>> checking for unistd.h... yes
>>>>>>> checking proj.h usability... yes
>>>>>>> checking proj.h presence... yes
>>>>>>> checking for proj.h... yes
>>>>>>> checking for proj_context_create in -lproj... yes
>>>>>>> checking Using GDAL < 3 with PROJ >= 6... no
>>>>>>> checking PROJ version >= 4.8.0... yes
>>>>>>> checking PROJ: proj.db found and readable... yes
>>>>>>> configure: Package CPP flags:  -I/usr/local/include
>>>> -I/usr/local/include
>>>>>>> -DPROJ_H_API
>>>>>>> configure: Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
>>>> -lproj
>>>>>>> configure: creating ./config.status
>>>>>>> config.status: creating src/Makevars
>>>>>>> ** libs
>>>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>> -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
>>>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>> -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
>>>>>>> gdal-bindings.o
>>>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
>>>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
>>>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o
>> local_stubs.o
>>>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>> -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
>>>>>>> gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
>>>> ogr_polygons.o
>>>>>>> g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>> -I/usr/local/include
>>>>>>> -I/usr/local/include -DPROJ_H_API
>>>>>>> -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>> -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
>>>>>>> ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
>>>>>>> ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in
>> this
>>>>>>> scope
>>>>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>>>          ^~~~~~~~~~~~~~~~~
>>>>>>> ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
>>>>>>>          OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>>>          ^~~~~~~~~~~~~~~~~
>>>>>>>          OSRProjVersion
>>>>>>> /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
>>>> failed
>>>>>>> make: *** [ogr_proj.o] Error 1
>>>>>>> ERROR: compilation failed for package ‘rgdal’
>>>>>>> * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>>>>>>
>>>>>>> The downloaded source packages are in
>>>>>>> ‘/tmp/RtmpNkdFOf/downloaded_packages’
>>>>>>> Warning message:
>>>>>>> In install.packages("rgdal") :
>>>>>>>   installation of package ‘rgdal’ had non-zero exit status
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Thomas E Adams, III
>>>>>>> 1724 Sage Lane
>>>>>>> Blacksburg, VA 24060
>>>>>>> [hidden email] (personal)
>>>>>>> [hidden email] (work)
>>>>>>>
>>>>>>> 1 (513) 739-9512 (cell)
>>>>>>>
>>>>>>>         [[alternative HTML version deleted]]
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> R-sig-Geo mailing list
>>>>>>> [hidden email]
>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>> --
>>>> Roger Bivand
>>>> Department of Economics, Norwegian School of Economics,
>>>> Helleveien 30, N-5045 Bergen, Norway.
>>>> voice: +47 55 95 93 55; e-mail: [hidden email]
>>>> https://orcid.org/0000-0003-2392-6140
>>>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>>
>>>
>>>
>>>
>>
>> --
>> Roger Bivand
>> Department of Economics, Norwegian School of Economics,
>> Helleveien 30, N-5045 Bergen, Norway.
>> voice: +47 55 95 93 55; e-mail: [hidden email]
>> https://orcid.org/0000-0003-2392-6140
>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>
>
>
>
--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: [hidden email]
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
_______________________________________________
R-sig-Geo mailing list
[hidden email]
https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Roger Bivand
Department of Economics
Norwegian School of Economics
Helleveien 30
N-5045 Bergen, Norway
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Re: Trouble installing rgdal

Roger Bivand
Administrator
On Fri, 3 Jul 2020, Roger Bivand wrote:

> On Fri, 3 Jul 2020, Thomas Adams wrote:
>
>>  Hi Roger,
>>
>>  I just tried re-installing withou using the argument and got this:
>
> Very useful, thanks - painful but another case of staying too close to the
> front. proj_create_crs_to_crs_from_pj() was new in PROJ 6.2.0. I'll try to
> adapt to accommodate older PROJ 6.

Re-creating a GDAL 3.0.0 with PROJ 6.1.0 platform has thrown up another
issue which which I'm struggling. I'll try to resolve it, but until then
advice would be to update GDAL and PROJ to 3.0.4 and 6.3.1, which we know
work (those are the versions in the CRAN Windows binary).

Roger

>
> Roger
>
>>
>>  teaiii@teaiii-Leopard-WS:~$ sudo R CMD INSTALL rgdal_1.5-13.tar.gz
>>  * installing to library ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
>>  * installing *source* package ‘rgdal’ ...
>>  ** using staged installation
>> configure:  R_HOME: /usr/local/lib/R
>> configure:  CC: gcc
>> configure:  CXX: g++ -std=gnu++11
>> configure:  CFLAGS: -g -O2
>> configure:  CPPFLAGS: -I/usr/local/include
>> configure:  CXXFLAGS: -g -O2
>> configure: LDFLAGS:  -L/usr/local/lib
>> configure: LDFLAGS:  -L/usr/local/lib
>> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
>> configure:  CXX is: g++ -std=gnu++11
>> configure:  C++11 support available
>> configure:  rgdal: 1.5-13
>>  checking for /usr/bin/svnversion... yes
>>  cat: inst/SVN_VERSION: No such file or directory
>> configure:  svn revision:
>>  checking for gdal-config... /usr/local/bin/gdal-config
>>  checking gdal-config usability... yes
>> configure:  GDAL: 3.0.0
>>  checking GDAL version >= 1.11.4... yes
>>  checking GDAL version <= 2.5 or >= 3.0... yes
>>  checking GDAL: linking with --libs only... yes
>>  checking GDAL: gdal-config data directory readable... yes
>>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
>> configure:  pkg-config proj exists, will use it
>> configure:  PROJ version: 6.1.0
>> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
>> configure:  PROJ LIBS: -L/usr/local/lib -lproj
>>  checking PROJ header API:... yes
>>  checking whether the C++ compiler works... yes
>>  checking for C++ compiler default output file name... a.out
>>  checking for suffix of executables...
>>  checking whether we are cross compiling... no
>>  checking for suffix of object files... o
>>  checking whether we are using the GNU C++ compiler... yes
>>  checking whether g++ -std=gnu++11 accepts -g... yes
>>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
>>  checking for grep that handles long lines and -e... /bin/grep
>>  checking for egrep... /bin/grep -E
>>  checking for ANSI C header files... yes
>>  checking for sys/types.h... yes
>>  checking for sys/stat.h... yes
>>  checking for stdlib.h... yes
>>  checking for string.h... yes
>>  checking for memory.h... yes
>>  checking for strings.h... yes
>>  checking for inttypes.h... yes
>>  checking for stdint.h... yes
>>  checking for unistd.h... yes
>>  checking proj.h usability... yes
>>  checking proj.h presence... yes
>>  checking for proj.h... yes
>>  checking for proj_context_create in -lproj... yes
>>  checking Using GDAL < 3 with PROJ >= 6... no
>>  checking PROJ version >= 4.8.0... yes
>>  checking PROJ: proj.db found and readable... yes
>> configure:  Package CPP flags:  -I/usr/local/include -I/usr/local/include
>>  -DPROJ_H_API
>> configure:  Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib -lproj
>> configure:  creating ./config.status
>>  config.status: creating src/Makevars
>>  ** libs
>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>  -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>  -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
>>  gdal-bindings.o
>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>  -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>  -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>  -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c ogrdrivers.cpp -o ogrdrivers.o
>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>  -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c ogrsource.cpp -o ogrsource.o
>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>  -I/usr/local/include
>>  -I/usr/local/include -DPROJ_H_API
>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>  -I/usr/local/include   -fpic  -g -O2  -c proj6.cpp -o proj6.o
>>  proj6.cpp: In function ‘SEXPREC* transform_ng(SEXP, SEXP, SEXP, SEXP,
>>  SEXP,
>>  SEXP, SEXP)’:
>>  proj6.cpp:521:29: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
>>  in this scope
>>          if ((pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>  source_crs,
>>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>  proj6.cpp:521:29: note: suggested alternative: ‘proj_create_crs_to_crs’
>>          if ((pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>  source_crs,
>>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>                              proj_create_crs_to_crs
>>  proj6.cpp: In function ‘SEXPREC* project_ng_coordOp(SEXP, SEXP)’:
>>  proj6.cpp:704:33: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
>>  in this scope
>>      if (use_inv) pj_transform =
>>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
>>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>  proj6.cpp:704:33: note: suggested alternative: ‘proj_create_crs_to_crs’
>>      if (use_inv) pj_transform =
>>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
>>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>                                  proj_create_crs_to_crs
>>  proj6.cpp:706:25: error: ‘proj_create_crs_to_crs_from_pj’ was not declared
>>  in this scope
>>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>  source_crs,
>>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>  proj6.cpp:706:25: note: suggested alternative: ‘proj_create_crs_to_crs’
>>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>  source_crs,
>>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>                          proj_create_crs_to_crs
>>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'proj6.o' failed
>>  make: *** [proj6.o] Error 1
>>  ERROR: compilation failed for package ‘rgdal’
>>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>  * restoring previous
>>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>
>>  On Fri, Jul 3, 2020 at 5:45 AM Roger Bivand <[hidden email]> wrote:
>>
>>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
>>>
>>>>  Roger,
>>>>
>>>>  Thank you so much; after downloading the *.tar.gz file, the that did the
>>>>  trick, using:
>>>>
>>>>  sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
>>>>  rgdal_1.5-13.tar.gz
>>>
>>>  Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
>>>  --configure-args=--with-proj_api="proj_api.h", which is only needed if
>>>  GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if GDAL
>>>>  = 3 && PROJ >= 6 with this configure argument, as it is only a
>>>  work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested in
>>>  that setting.
>>>
>>>  Thanks for reporting back!
>>>
>>>  Roger
>>>
>>>>
>>>>  Best regards!
>>>>  Tom
>>>>
>>>>
>>>>  On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]> wrote:
>>>>
>>>>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
>>>>>
>>>>>>  Hi Bennet!
>>>>>>
>>>>>>  Thank you for your help, but I get the same error...
>>>>>
>>>>>  Tom,
>>>>>
>>>>>  Once rgdal revision 1029 completes building (check first) on:
>>>>>
>>>>>  https://r-forge.r-project.org/R/?group_id=884
>>>>>
>>>>>  please re-try. The missing function is not in the GDAL 3.0.0 headers,
>>>  but
>>>>>  is in the 3.0.1 headers. I've modified the check so as not to try for
>>>  just
>>>>>>  = 3 to >= 3.0.1.
>>>>>
>>>>>  Roger
>>>>>
>>>>>>
>>>>>>  Tom
>>>>>>
>>>>>>  On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]> wrote:
>>>>>>
>>>>>>>  You might try this
>>>>>>>
>>>>>>>  install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
>>>>>>>  repos="http://R-Forge.R-project.org")
>>>>>>>
>>>>>>>  as there have been recent patches to rgdal that might help that have
>>>>>>>  been incorporated there.
>>>>>>>
>>>>>>>
>>>>>>>  On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]> wrote:
>>>>>>>>
>>>>>>>>  Hi all,
>>>>>>>>
>>>>>>>>  I have searched the internet and have spent a few days trying to get
>>>  to
>>>>>>>  the
>>>>>>>>  problem when I try to install rgdal into my Ubuntu 18.04 system. I
>>>  have
>>>>>>>>  done this many times previously, but cannot seem to track down what
>>>>>>>>  I
>>>>>  am
>>>>>>>>  doing wrong now. I have tried a forced install from sources with and
>>>>>>>>  without dependencies. Below is what I get. Any help is appreciated.
>>>>>>>>
>>>>>>>>  Tom
>>>>>>>>
>>>>>>>>>  install.packages("rgdal")
>>>>>>>>  Installing package into
>>>>>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
>>>>>>>>  (as ‘lib’ is unspecified)
>>>>>>>>  trying URL 'https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
>>>>>>>>  Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
>>>>>>>>  ==================================================
>>>>>>>>  downloaded 2.2 MB
>>>>>>>>
>>>>>>>>  * installing *source* package ‘rgdal’ ...
>>>>>>>>  ** package ‘rgdal’ successfully unpacked and MD5 sums checked
>>>>>>>>  ** using staged installation
>>>>>>>> configure:  R_HOME: /usr/local/lib/R
>>>>>>>> configure:  CC: gcc
>>>>>>>> configure:  CXX: g++ -std=gnu++11
>>>>>>>> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
>>>>>>>> configure:  CXX is: g++ -std=gnu++11
>>>>>>>> configure:  C++11 support available
>>>>>>>> configure:  rgdal: 1.5-12
>>>>>>>>  checking for /usr/bin/svnversion... yes
>>>>>>>> configure:  svn revision: 1018
>>>>>>>>  checking for gdal-config... /usr/local/bin/gdal-config
>>>>>>>>  checking gdal-config usability... yes
>>>>>>>> configure:  GDAL: 3.0.0
>>>>>>>>  checking GDAL version >= 1.11.4... yes
>>>>>>>>  checking GDAL version <= 2.5 or >= 3.0... yes
>>>>>>>>  checking GDAL: linking with --libs only... yes
>>>>>>>>  checking GDAL: gdal-config data directory readable... yes
>>>>>>>>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
>>>>>>>> configure:  pkg-config proj exists, will use it
>>>>>>>> configure:  PROJ version: 6.1.0
>>>>>>>> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
>>>>>>>> configure:  PROJ LIBS: -L/usr/local/lib -lproj
>>>>>>>>  checking PROJ header API:... yes
>>>>>>>>  checking whether the C++ compiler works... yes
>>>>>>>>  checking for C++ compiler default output file name... a.out
>>>>>>>>  checking for suffix of executables...
>>>>>>>>  checking whether we are cross compiling... no
>>>>>>>>  checking for suffix of object files... o
>>>>>>>>  checking whether we are using the GNU C++ compiler... yes
>>>>>>>>  checking whether g++ -std=gnu++11 accepts -g... yes
>>>>>>>>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
>>>>>>>>  checking for grep that handles long lines and -e... /bin/grep
>>>>>>>>  checking for egrep... /bin/grep -E
>>>>>>>>  checking for ANSI C header files... yes
>>>>>>>>  checking for sys/types.h... yes
>>>>>>>>  checking for sys/stat.h... yes
>>>>>>>>  checking for stdlib.h... yes
>>>>>>>>  checking for string.h... yes
>>>>>>>>  checking for memory.h... yes
>>>>>>>>  checking for strings.h... yes
>>>>>>>>  checking for inttypes.h... yes
>>>>>>>>  checking for stdint.h... yes
>>>>>>>>  checking for unistd.h... yes
>>>>>>>>  checking proj.h usability... yes
>>>>>>>>  checking proj.h presence... yes
>>>>>>>>  checking for proj.h... yes
>>>>>>>>  checking for proj_context_create in -lproj... yes
>>>>>>>>  checking Using GDAL < 3 with PROJ >= 6... no
>>>>>>>>  checking PROJ version >= 4.8.0... yes
>>>>>>>>  checking PROJ: proj.db found and readable... yes
>>>>>>>> configure:  Package CPP flags:  -I/usr/local/include
>>>>>  -I/usr/local/include
>>>>>>>>  -DPROJ_H_API
>>>>>>>> configure:  Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
>>>>>  -lproj
>>>>>>>> configure:  creating ./config.status
>>>>>>>>  config.status: creating src/Makevars
>>>>>>>>  ** libs
>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>  -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o
>>>>>>>>  OGR_write.o
>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>  -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
>>>>>>>>  gdal-bindings.o
>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o
>>>  local_stubs.o
>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>  -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
>>>>>  ogr_polygons.o
>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>  -I/usr/local/include
>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
>>>>>>>>  ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
>>>>>>>>  ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared in
>>>  this
>>>>>>>>  scope
>>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>>>>           ^~~~~~~~~~~~~~~~~
>>>>>>>>  ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
>>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>>>>           ^~~~~~~~~~~~~~~~~
>>>>>>>>           OSRProjVersion
>>>>>>>>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
>>>>>  failed
>>>>>>>>  make: *** [ogr_proj.o] Error 1
>>>>>>>>  ERROR: compilation failed for package ‘rgdal’
>>>>>>>>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>>>>>>>
>>>>>>>>  The downloaded source packages are in
>>>>>>>>  ‘/tmp/RtmpNkdFOf/downloaded_packages’
>>>>>>>>  Warning message:
>>>>>>>>  In install.packages("rgdal") :
>>>>>>>>    installation of package ‘rgdal’ had non-zero exit status
>>>>>>>>
>>>>>>>>
>>>>>>>>  --
>>>>>>>>  Thomas E Adams, III
>>>>>>>>  1724 Sage Lane
>>>>>>>>  Blacksburg, VA 24060
>>>>>>>>  [hidden email] (personal)
>>>>>>>>  [hidden email] (work)
>>>>>>>>
>>>>>>>>  1 (513) 739-9512 (cell)
>>>>>>>>
>>>>>>>>          [[alternative HTML version deleted]]
>>>>>>>>
>>>>>>>>  _______________________________________________
>>>>>>>>  R-sig-Geo mailing list
>>>>>>>>  [hidden email]
>>>>>>>>  https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>  --
>>>>>  Roger Bivand
>>>>>  Department of Economics, Norwegian School of Economics,
>>>>>  Helleveien 30, N-5045 Bergen, Norway.
>>>>>  voice: +47 55 95 93 55; e-mail: [hidden email]
>>>>>  https://orcid.org/0000-0003-2392-6140
>>>>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>>>
>>>>
>>>>
>>>>
>>>
>>>  --
>>>  Roger Bivand
>>>  Department of Economics, Norwegian School of Economics,
>>>  Helleveien 30, N-5045 Bergen, Norway.
>>>  voice: +47 55 95 93 55; e-mail: [hidden email]
>>>  https://orcid.org/0000-0003-2392-6140
>>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>
>>
>>
>>
>
>
--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: [hidden email]
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
_______________________________________________
R-sig-Geo mailing list
[hidden email]
https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Roger Bivand
Department of Economics
Norwegian School of Economics
Helleveien 30
N-5045 Bergen, Norway
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Re: Trouble installing rgdal

Thomas Adams-2
Roger,

OK; I'll update GDAL and PROJ to 3.0.4 and 6.3.1 and get back to you... you
anticipated my question... thank you!

Best,
Tom

On Fri, Jul 3, 2020 at 11:24 AM Roger Bivand <[hidden email]> wrote:

> On Fri, 3 Jul 2020, Roger Bivand wrote:
>
> > On Fri, 3 Jul 2020, Thomas Adams wrote:
> >
> >>  Hi Roger,
> >>
> >>  I just tried re-installing withou using the argument and got this:
> >
> > Very useful, thanks - painful but another case of staying too close to
> the
> > front. proj_create_crs_to_crs_from_pj() was new in PROJ 6.2.0. I'll try
> to
> > adapt to accommodate older PROJ 6.
>
> Re-creating a GDAL 3.0.0 with PROJ 6.1.0 platform has thrown up another
> issue which which I'm struggling. I'll try to resolve it, but until then
> advice would be to update GDAL and PROJ to 3.0.4 and 6.3.1, which we know
> work (those are the versions in the CRAN Windows binary).
>
> Roger
>
> >
> > Roger
> >
> >>
> >>  teaiii@teaiii-Leopard-WS:~$ sudo R CMD INSTALL rgdal_1.5-13.tar.gz
> >>  * installing to library
> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> >>  * installing *source* package ‘rgdal’ ...
> >>  ** using staged installation
> >> configure:  R_HOME: /usr/local/lib/R
> >> configure:  CC: gcc
> >> configure:  CXX: g++ -std=gnu++11
> >> configure:  CFLAGS: -g -O2
> >> configure:  CPPFLAGS: -I/usr/local/include
> >> configure:  CXXFLAGS: -g -O2
> >> configure: LDFLAGS:  -L/usr/local/lib
> >> configure: LDFLAGS:  -L/usr/local/lib
> >> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
> >> configure:  CXX is: g++ -std=gnu++11
> >> configure:  C++11 support available
> >> configure:  rgdal: 1.5-13
> >>  checking for /usr/bin/svnversion... yes
> >>  cat: inst/SVN_VERSION: No such file or directory
> >> configure:  svn revision:
> >>  checking for gdal-config... /usr/local/bin/gdal-config
> >>  checking gdal-config usability... yes
> >> configure:  GDAL: 3.0.0
> >>  checking GDAL version >= 1.11.4... yes
> >>  checking GDAL version <= 2.5 or >= 3.0... yes
> >>  checking GDAL: linking with --libs only... yes
> >>  checking GDAL: gdal-config data directory readable... yes
> >>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> >> configure:  pkg-config proj exists, will use it
> >> configure:  PROJ version: 6.1.0
> >> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> >> configure:  PROJ LIBS: -L/usr/local/lib -lproj
> >>  checking PROJ header API:... yes
> >>  checking whether the C++ compiler works... yes
> >>  checking for C++ compiler default output file name... a.out
> >>  checking for suffix of executables...
> >>  checking whether we are cross compiling... no
> >>  checking for suffix of object files... o
> >>  checking whether we are using the GNU C++ compiler... yes
> >>  checking whether g++ -std=gnu++11 accepts -g... yes
> >>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> >>  checking for grep that handles long lines and -e... /bin/grep
> >>  checking for egrep... /bin/grep -E
> >>  checking for ANSI C header files... yes
> >>  checking for sys/types.h... yes
> >>  checking for sys/stat.h... yes
> >>  checking for stdlib.h... yes
> >>  checking for string.h... yes
> >>  checking for memory.h... yes
> >>  checking for strings.h... yes
> >>  checking for inttypes.h... yes
> >>  checking for stdint.h... yes
> >>  checking for unistd.h... yes
> >>  checking proj.h usability... yes
> >>  checking proj.h presence... yes
> >>  checking for proj.h... yes
> >>  checking for proj_context_create in -lproj... yes
> >>  checking Using GDAL < 3 with PROJ >= 6... no
> >>  checking PROJ version >= 4.8.0... yes
> >>  checking PROJ: proj.db found and readable... yes
> >> configure:  Package CPP flags:  -I/usr/local/include
> -I/usr/local/include
> >>  -DPROJ_H_API
> >> configure:  Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
> -lproj
> >> configure:  creating ./config.status
> >>  config.status: creating src/Makevars
> >>  ** libs
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> >>  gdal-bindings.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
> ogr_polygons.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogrdrivers.cpp -o ogrdrivers.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogrsource.cpp -o ogrsource.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c proj6.cpp -o proj6.o
> >>  proj6.cpp: In function ‘SEXPREC* transform_ng(SEXP, SEXP, SEXP, SEXP,
> >>  SEXP,
> >>  SEXP, SEXP)’:
> >>  proj6.cpp:521:29: error: ‘proj_create_crs_to_crs_from_pj’ was not
> declared
> >>  in this scope
> >>          if ((pj_transform =
> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>  proj6.cpp:521:29: note: suggested alternative: ‘proj_create_crs_to_crs’
> >>          if ((pj_transform =
> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>                              proj_create_crs_to_crs
> >>  proj6.cpp: In function ‘SEXPREC* project_ng_coordOp(SEXP, SEXP)’:
> >>  proj6.cpp:704:33: error: ‘proj_create_crs_to_crs_from_pj’ was not
> declared
> >>  in this scope
> >>      if (use_inv) pj_transform =
> >>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
> >>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>  proj6.cpp:704:33: note: suggested alternative: ‘proj_create_crs_to_crs’
> >>      if (use_inv) pj_transform =
> >>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
> >>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>                                  proj_create_crs_to_crs
> >>  proj6.cpp:706:25: error: ‘proj_create_crs_to_crs_from_pj’ was not
> declared
> >>  in this scope
> >>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>  proj6.cpp:706:25: note: suggested alternative: ‘proj_create_crs_to_crs’
> >>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>                          proj_create_crs_to_crs
> >>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'proj6.o' failed
> >>  make: *** [proj6.o] Error 1
> >>  ERROR: compilation failed for package ‘rgdal’
> >>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>  * restoring previous
> >>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>
> >>  On Fri, Jul 3, 2020 at 5:45 AM Roger Bivand <[hidden email]>
> wrote:
> >>
> >>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
> >>>
> >>>>  Roger,
> >>>>
> >>>>  Thank you so much; after downloading the *.tar.gz file, the that did
> the
> >>>>  trick, using:
> >>>>
> >>>>  sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
> >>>>  rgdal_1.5-13.tar.gz
> >>>
> >>>  Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
> >>>  --configure-args=--with-proj_api="proj_api.h", which is only needed if
> >>>  GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if
> GDAL
> >>>>  = 3 && PROJ >= 6 with this configure argument, as it is only a
> >>>  work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested
> in
> >>>  that setting.
> >>>
> >>>  Thanks for reporting back!
> >>>
> >>>  Roger
> >>>
> >>>>
> >>>>  Best regards!
> >>>>  Tom
> >>>>
> >>>>
> >>>>  On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]>
> wrote:
> >>>>
> >>>>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
> >>>>>
> >>>>>>  Hi Bennet!
> >>>>>>
> >>>>>>  Thank you for your help, but I get the same error...
> >>>>>
> >>>>>  Tom,
> >>>>>
> >>>>>  Once rgdal revision 1029 completes building (check first) on:
> >>>>>
> >>>>>  https://r-forge.r-project.org/R/?group_id=884
> >>>>>
> >>>>>  please re-try. The missing function is not in the GDAL 3.0.0
> headers,
> >>>  but
> >>>>>  is in the 3.0.1 headers. I've modified the check so as not to try
> for
> >>>  just
> >>>>>>  = 3 to >= 3.0.1.
> >>>>>
> >>>>>  Roger
> >>>>>
> >>>>>>
> >>>>>>  Tom
> >>>>>>
> >>>>>>  On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]>
> wrote:
> >>>>>>
> >>>>>>>  You might try this
> >>>>>>>
> >>>>>>>  install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
> >>>>>>>  repos="http://R-Forge.R-project.org")
> >>>>>>>
> >>>>>>>  as there have been recent patches to rgdal that might help that
> have
> >>>>>>>  been incorporated there.
> >>>>>>>
> >>>>>>>
> >>>>>>>  On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]>
> wrote:
> >>>>>>>>
> >>>>>>>>  Hi all,
> >>>>>>>>
> >>>>>>>>  I have searched the internet and have spent a few days trying to
> get
> >>>  to
> >>>>>>>  the
> >>>>>>>>  problem when I try to install rgdal into my Ubuntu 18.04 system.
> I
> >>>  have
> >>>>>>>>  done this many times previously, but cannot seem to track down
> what
> >>>>>>>>  I
> >>>>>  am
> >>>>>>>>  doing wrong now. I have tried a forced install from sources with
> and
> >>>>>>>>  without dependencies. Below is what I get. Any help is
> appreciated.
> >>>>>>>>
> >>>>>>>>  Tom
> >>>>>>>>
> >>>>>>>>>  install.packages("rgdal")
> >>>>>>>>  Installing package into
> >>>>>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> >>>>>>>>  (as ‘lib’ is unspecified)
> >>>>>>>>  trying URL '
> https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
> >>>>>>>>  Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> >>>>>>>>  ==================================================
> >>>>>>>>  downloaded 2.2 MB
> >>>>>>>>
> >>>>>>>>  * installing *source* package ‘rgdal’ ...
> >>>>>>>>  ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> >>>>>>>>  ** using staged installation
> >>>>>>>> configure:  R_HOME: /usr/local/lib/R
> >>>>>>>> configure:  CC: gcc
> >>>>>>>> configure:  CXX: g++ -std=gnu++11
> >>>>>>>> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
> >>>>>>>> configure:  CXX is: g++ -std=gnu++11
> >>>>>>>> configure:  C++11 support available
> >>>>>>>> configure:  rgdal: 1.5-12
> >>>>>>>>  checking for /usr/bin/svnversion... yes
> >>>>>>>> configure:  svn revision: 1018
> >>>>>>>>  checking for gdal-config... /usr/local/bin/gdal-config
> >>>>>>>>  checking gdal-config usability... yes
> >>>>>>>> configure:  GDAL: 3.0.0
> >>>>>>>>  checking GDAL version >= 1.11.4... yes
> >>>>>>>>  checking GDAL version <= 2.5 or >= 3.0... yes
> >>>>>>>>  checking GDAL: linking with --libs only... yes
> >>>>>>>>  checking GDAL: gdal-config data directory readable... yes
> >>>>>>>>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable...
> yes
> >>>>>>>> configure:  pkg-config proj exists, will use it
> >>>>>>>> configure:  PROJ version: 6.1.0
> >>>>>>>> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> >>>>>>>> configure:  PROJ LIBS: -L/usr/local/lib -lproj
> >>>>>>>>  checking PROJ header API:... yes
> >>>>>>>>  checking whether the C++ compiler works... yes
> >>>>>>>>  checking for C++ compiler default output file name... a.out
> >>>>>>>>  checking for suffix of executables...
> >>>>>>>>  checking whether we are cross compiling... no
> >>>>>>>>  checking for suffix of object files... o
> >>>>>>>>  checking whether we are using the GNU C++ compiler... yes
> >>>>>>>>  checking whether g++ -std=gnu++11 accepts -g... yes
> >>>>>>>>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> >>>>>>>>  checking for grep that handles long lines and -e... /bin/grep
> >>>>>>>>  checking for egrep... /bin/grep -E
> >>>>>>>>  checking for ANSI C header files... yes
> >>>>>>>>  checking for sys/types.h... yes
> >>>>>>>>  checking for sys/stat.h... yes
> >>>>>>>>  checking for stdlib.h... yes
> >>>>>>>>  checking for string.h... yes
> >>>>>>>>  checking for memory.h... yes
> >>>>>>>>  checking for strings.h... yes
> >>>>>>>>  checking for inttypes.h... yes
> >>>>>>>>  checking for stdint.h... yes
> >>>>>>>>  checking for unistd.h... yes
> >>>>>>>>  checking proj.h usability... yes
> >>>>>>>>  checking proj.h presence... yes
> >>>>>>>>  checking for proj.h... yes
> >>>>>>>>  checking for proj_context_create in -lproj... yes
> >>>>>>>>  checking Using GDAL < 3 with PROJ >= 6... no
> >>>>>>>>  checking PROJ version >= 4.8.0... yes
> >>>>>>>>  checking PROJ: proj.db found and readable... yes
> >>>>>>>> configure:  Package CPP flags:  -I/usr/local/include
> >>>>>  -I/usr/local/include
> >>>>>>>>  -DPROJ_H_API
> >>>>>>>> configure:  Package LIBS:  -L/usr/local/lib -lgdal
> -L/usr/local/lib
> >>>>>  -lproj
> >>>>>>>> configure:  creating ./config.status
> >>>>>>>>  config.status: creating src/Makevars
> >>>>>>>>  ** libs
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o
> >>>>>>>>  OGR_write.o
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> >>>>>>>>  gdal-bindings.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o
> >>>  local_stubs.o
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o
> ogr_geom.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
> >>>>>  ogr_polygons.o
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o
> ogr_proj.o
> >>>>>>>>  ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
> >>>>>>>>  ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared
> in
> >>>  this
> >>>>>>>>  scope
> >>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>>>>           ^~~~~~~~~~~~~~~~~
> >>>>>>>>  ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
> >>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>>>>           ^~~~~~~~~~~~~~~~~
> >>>>>>>>           OSRProjVersion
> >>>>>>>>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
> >>>>>  failed
> >>>>>>>>  make: *** [ogr_proj.o] Error 1
> >>>>>>>>  ERROR: compilation failed for package ‘rgdal’
> >>>>>>>>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>>>>>>>
> >>>>>>>>  The downloaded source packages are in
> >>>>>>>>  ‘/tmp/RtmpNkdFOf/downloaded_packages’
> >>>>>>>>  Warning message:
> >>>>>>>>  In install.packages("rgdal") :
> >>>>>>>>    installation of package ‘rgdal’ had non-zero exit status
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>  --
> >>>>>>>>  Thomas E Adams, III
> >>>>>>>>  1724 Sage Lane
> >>>>>>>>  Blacksburg, VA 24060
> >>>>>>>>  [hidden email] (personal)
> >>>>>>>>  [hidden email] (work)
> >>>>>>>>
> >>>>>>>>  1 (513) 739-9512 (cell)
> >>>>>>>>
> >>>>>>>>          [[alternative HTML version deleted]]
> >>>>>>>>
> >>>>>>>>  _______________________________________________
> >>>>>>>>  R-sig-Geo mailing list
> >>>>>>>>  [hidden email]
> >>>>>>>>  https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >>>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>
> >>>>>  --
> >>>>>  Roger Bivand
> >>>>>  Department of Economics, Norwegian School of Economics,
> >>>>>  Helleveien 30, N-5045 Bergen, Norway.
> >>>>>  voice: +47 55 95 93 55; e-mail: [hidden email]
> >>>>>  https://orcid.org/0000-0003-2392-6140
> >>>>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
> >>>>
> >>>>
> >>>>
> >>>>
> >>>
> >>>  --
> >>>  Roger Bivand
> >>>  Department of Economics, Norwegian School of Economics,
> >>>  Helleveien 30, N-5045 Bergen, Norway.
> >>>  voice: +47 55 95 93 55; e-mail: [hidden email]
> >>>  https://orcid.org/0000-0003-2392-6140
> >>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
> >>
> >>
> >>
> >>
> >
> >
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: [hidden email]
> https://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en



--
Thomas E Adams, III
1724 Sage Lane
Blacksburg, VA 24060
[hidden email] (personal)
[hidden email] (work)

1 (513) 739-9512 (cell)

        [[alternative HTML version deleted]]

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Re: Trouble installing rgdal

Thomas Adams-2
In reply to this post by Roger Bivand
Hi Roger!

I updated GDAL and PROJ to 3.0.4 and 6.3.1, respectively... the install
worked perfectly using:

sudo R CMD INSTALL rgdal_1.5-13.tar.gz

Thank you so much!

Best,
Tom

On Fri, Jul 3, 2020 at 11:24 AM Roger Bivand <[hidden email]> wrote:

> On Fri, 3 Jul 2020, Roger Bivand wrote:
>
> > On Fri, 3 Jul 2020, Thomas Adams wrote:
> >
> >>  Hi Roger,
> >>
> >>  I just tried re-installing withou using the argument and got this:
> >
> > Very useful, thanks - painful but another case of staying too close to
> the
> > front. proj_create_crs_to_crs_from_pj() was new in PROJ 6.2.0. I'll try
> to
> > adapt to accommodate older PROJ 6.
>
> Re-creating a GDAL 3.0.0 with PROJ 6.1.0 platform has thrown up another
> issue which which I'm struggling. I'll try to resolve it, but until then
> advice would be to update GDAL and PROJ to 3.0.4 and 6.3.1, which we know
> work (those are the versions in the CRAN Windows binary).
>
> Roger
>
> >
> > Roger
> >
> >>
> >>  teaiii@teaiii-Leopard-WS:~$ sudo R CMD INSTALL rgdal_1.5-13.tar.gz
> >>  * installing to library
> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> >>  * installing *source* package ‘rgdal’ ...
> >>  ** using staged installation
> >> configure:  R_HOME: /usr/local/lib/R
> >> configure:  CC: gcc
> >> configure:  CXX: g++ -std=gnu++11
> >> configure:  CFLAGS: -g -O2
> >> configure:  CPPFLAGS: -I/usr/local/include
> >> configure:  CXXFLAGS: -g -O2
> >> configure: LDFLAGS:  -L/usr/local/lib
> >> configure: LDFLAGS:  -L/usr/local/lib
> >> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
> >> configure:  CXX is: g++ -std=gnu++11
> >> configure:  C++11 support available
> >> configure:  rgdal: 1.5-13
> >>  checking for /usr/bin/svnversion... yes
> >>  cat: inst/SVN_VERSION: No such file or directory
> >> configure:  svn revision:
> >>  checking for gdal-config... /usr/local/bin/gdal-config
> >>  checking gdal-config usability... yes
> >> configure:  GDAL: 3.0.0
> >>  checking GDAL version >= 1.11.4... yes
> >>  checking GDAL version <= 2.5 or >= 3.0... yes
> >>  checking GDAL: linking with --libs only... yes
> >>  checking GDAL: gdal-config data directory readable... yes
> >>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
> >> configure:  pkg-config proj exists, will use it
> >> configure:  PROJ version: 6.1.0
> >> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> >> configure:  PROJ LIBS: -L/usr/local/lib -lproj
> >>  checking PROJ header API:... yes
> >>  checking whether the C++ compiler works... yes
> >>  checking for C++ compiler default output file name... a.out
> >>  checking for suffix of executables...
> >>  checking whether we are cross compiling... no
> >>  checking for suffix of object files... o
> >>  checking whether we are using the GNU C++ compiler... yes
> >>  checking whether g++ -std=gnu++11 accepts -g... yes
> >>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> >>  checking for grep that handles long lines and -e... /bin/grep
> >>  checking for egrep... /bin/grep -E
> >>  checking for ANSI C header files... yes
> >>  checking for sys/types.h... yes
> >>  checking for sys/stat.h... yes
> >>  checking for stdlib.h... yes
> >>  checking for string.h... yes
> >>  checking for memory.h... yes
> >>  checking for strings.h... yes
> >>  checking for inttypes.h... yes
> >>  checking for stdint.h... yes
> >>  checking for unistd.h... yes
> >>  checking proj.h usability... yes
> >>  checking proj.h presence... yes
> >>  checking for proj.h... yes
> >>  checking for proj_context_create in -lproj... yes
> >>  checking Using GDAL < 3 with PROJ >= 6... no
> >>  checking PROJ version >= 4.8.0... yes
> >>  checking PROJ: proj.db found and readable... yes
> >> configure:  Package CPP flags:  -I/usr/local/include
> -I/usr/local/include
> >>  -DPROJ_H_API
> >> configure:  Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
> -lproj
> >> configure:  creating ./config.status
> >>  config.status: creating src/Makevars
> >>  ** libs
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> >>  gdal-bindings.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
> >>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
> ogr_polygons.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogrdrivers.cpp -o ogrdrivers.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c ogrsource.cpp -o ogrsource.o
> >>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>  -I/usr/local/include
> >>  -I/usr/local/include -DPROJ_H_API
> >>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>  -I/usr/local/include   -fpic  -g -O2  -c proj6.cpp -o proj6.o
> >>  proj6.cpp: In function ‘SEXPREC* transform_ng(SEXP, SEXP, SEXP, SEXP,
> >>  SEXP,
> >>  SEXP, SEXP)’:
> >>  proj6.cpp:521:29: error: ‘proj_create_crs_to_crs_from_pj’ was not
> declared
> >>  in this scope
> >>          if ((pj_transform =
> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>  proj6.cpp:521:29: note: suggested alternative: ‘proj_create_crs_to_crs’
> >>          if ((pj_transform =
> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>                              proj_create_crs_to_crs
> >>  proj6.cpp: In function ‘SEXPREC* project_ng_coordOp(SEXP, SEXP)’:
> >>  proj6.cpp:704:33: error: ‘proj_create_crs_to_crs_from_pj’ was not
> declared
> >>  in this scope
> >>      if (use_inv) pj_transform =
> >>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
> >>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>  proj6.cpp:704:33: note: suggested alternative: ‘proj_create_crs_to_crs’
> >>      if (use_inv) pj_transform =
> >>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
> >>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>                                  proj_create_crs_to_crs
> >>  proj6.cpp:706:25: error: ‘proj_create_crs_to_crs_from_pj’ was not
> declared
> >>  in this scope
> >>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>  proj6.cpp:706:25: note: suggested alternative: ‘proj_create_crs_to_crs’
> >>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
> >>  source_crs,
> >>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>                          proj_create_crs_to_crs
> >>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'proj6.o' failed
> >>  make: *** [proj6.o] Error 1
> >>  ERROR: compilation failed for package ‘rgdal’
> >>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>  * restoring previous
> >>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>
> >>  On Fri, Jul 3, 2020 at 5:45 AM Roger Bivand <[hidden email]>
> wrote:
> >>
> >>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
> >>>
> >>>>  Roger,
> >>>>
> >>>>  Thank you so much; after downloading the *.tar.gz file, the that did
> the
> >>>>  trick, using:
> >>>>
> >>>>  sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
> >>>>  rgdal_1.5-13.tar.gz
> >>>
> >>>  Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
> >>>  --configure-args=--with-proj_api="proj_api.h", which is only needed if
> >>>  GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if
> GDAL
> >>>>  = 3 && PROJ >= 6 with this configure argument, as it is only a
> >>>  work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested
> in
> >>>  that setting.
> >>>
> >>>  Thanks for reporting back!
> >>>
> >>>  Roger
> >>>
> >>>>
> >>>>  Best regards!
> >>>>  Tom
> >>>>
> >>>>
> >>>>  On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]>
> wrote:
> >>>>
> >>>>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
> >>>>>
> >>>>>>  Hi Bennet!
> >>>>>>
> >>>>>>  Thank you for your help, but I get the same error...
> >>>>>
> >>>>>  Tom,
> >>>>>
> >>>>>  Once rgdal revision 1029 completes building (check first) on:
> >>>>>
> >>>>>  https://r-forge.r-project.org/R/?group_id=884
> >>>>>
> >>>>>  please re-try. The missing function is not in the GDAL 3.0.0
> headers,
> >>>  but
> >>>>>  is in the 3.0.1 headers. I've modified the check so as not to try
> for
> >>>  just
> >>>>>>  = 3 to >= 3.0.1.
> >>>>>
> >>>>>  Roger
> >>>>>
> >>>>>>
> >>>>>>  Tom
> >>>>>>
> >>>>>>  On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]>
> wrote:
> >>>>>>
> >>>>>>>  You might try this
> >>>>>>>
> >>>>>>>  install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
> >>>>>>>  repos="http://R-Forge.R-project.org")
> >>>>>>>
> >>>>>>>  as there have been recent patches to rgdal that might help that
> have
> >>>>>>>  been incorporated there.
> >>>>>>>
> >>>>>>>
> >>>>>>>  On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]>
> wrote:
> >>>>>>>>
> >>>>>>>>  Hi all,
> >>>>>>>>
> >>>>>>>>  I have searched the internet and have spent a few days trying to
> get
> >>>  to
> >>>>>>>  the
> >>>>>>>>  problem when I try to install rgdal into my Ubuntu 18.04 system.
> I
> >>>  have
> >>>>>>>>  done this many times previously, but cannot seem to track down
> what
> >>>>>>>>  I
> >>>>>  am
> >>>>>>>>  doing wrong now. I have tried a forced install from sources with
> and
> >>>>>>>>  without dependencies. Below is what I get. Any help is
> appreciated.
> >>>>>>>>
> >>>>>>>>  Tom
> >>>>>>>>
> >>>>>>>>>  install.packages("rgdal")
> >>>>>>>>  Installing package into
> >>>>>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
> >>>>>>>>  (as ‘lib’ is unspecified)
> >>>>>>>>  trying URL '
> https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
> >>>>>>>>  Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> >>>>>>>>  ==================================================
> >>>>>>>>  downloaded 2.2 MB
> >>>>>>>>
> >>>>>>>>  * installing *source* package ‘rgdal’ ...
> >>>>>>>>  ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> >>>>>>>>  ** using staged installation
> >>>>>>>> configure:  R_HOME: /usr/local/lib/R
> >>>>>>>> configure:  CC: gcc
> >>>>>>>> configure:  CXX: g++ -std=gnu++11
> >>>>>>>> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
> >>>>>>>> configure:  CXX is: g++ -std=gnu++11
> >>>>>>>> configure:  C++11 support available
> >>>>>>>> configure:  rgdal: 1.5-12
> >>>>>>>>  checking for /usr/bin/svnversion... yes
> >>>>>>>> configure:  svn revision: 1018
> >>>>>>>>  checking for gdal-config... /usr/local/bin/gdal-config
> >>>>>>>>  checking gdal-config usability... yes
> >>>>>>>> configure:  GDAL: 3.0.0
> >>>>>>>>  checking GDAL version >= 1.11.4... yes
> >>>>>>>>  checking GDAL version <= 2.5 or >= 3.0... yes
> >>>>>>>>  checking GDAL: linking with --libs only... yes
> >>>>>>>>  checking GDAL: gdal-config data directory readable... yes
> >>>>>>>>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable...
> yes
> >>>>>>>> configure:  pkg-config proj exists, will use it
> >>>>>>>> configure:  PROJ version: 6.1.0
> >>>>>>>> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
> >>>>>>>> configure:  PROJ LIBS: -L/usr/local/lib -lproj
> >>>>>>>>  checking PROJ header API:... yes
> >>>>>>>>  checking whether the C++ compiler works... yes
> >>>>>>>>  checking for C++ compiler default output file name... a.out
> >>>>>>>>  checking for suffix of executables...
> >>>>>>>>  checking whether we are cross compiling... no
> >>>>>>>>  checking for suffix of object files... o
> >>>>>>>>  checking whether we are using the GNU C++ compiler... yes
> >>>>>>>>  checking whether g++ -std=gnu++11 accepts -g... yes
> >>>>>>>>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
> >>>>>>>>  checking for grep that handles long lines and -e... /bin/grep
> >>>>>>>>  checking for egrep... /bin/grep -E
> >>>>>>>>  checking for ANSI C header files... yes
> >>>>>>>>  checking for sys/types.h... yes
> >>>>>>>>  checking for sys/stat.h... yes
> >>>>>>>>  checking for stdlib.h... yes
> >>>>>>>>  checking for string.h... yes
> >>>>>>>>  checking for memory.h... yes
> >>>>>>>>  checking for strings.h... yes
> >>>>>>>>  checking for inttypes.h... yes
> >>>>>>>>  checking for stdint.h... yes
> >>>>>>>>  checking for unistd.h... yes
> >>>>>>>>  checking proj.h usability... yes
> >>>>>>>>  checking proj.h presence... yes
> >>>>>>>>  checking for proj.h... yes
> >>>>>>>>  checking for proj_context_create in -lproj... yes
> >>>>>>>>  checking Using GDAL < 3 with PROJ >= 6... no
> >>>>>>>>  checking PROJ version >= 4.8.0... yes
> >>>>>>>>  checking PROJ: proj.db found and readable... yes
> >>>>>>>> configure:  Package CPP flags:  -I/usr/local/include
> >>>>>  -I/usr/local/include
> >>>>>>>>  -DPROJ_H_API
> >>>>>>>> configure:  Package LIBS:  -L/usr/local/lib -lgdal
> -L/usr/local/lib
> >>>>>  -lproj
> >>>>>>>> configure:  creating ./config.status
> >>>>>>>>  config.status: creating src/Makevars
> >>>>>>>>  ** libs
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o
> >>>>>>>>  OGR_write.o
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
> >>>>>>>>  gdal-bindings.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o
> >>>  local_stubs.o
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o
> ogr_geom.o
> >>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
> >>>>>  ogr_polygons.o
> >>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
> >>>>>>>  -I/usr/local/include
> >>>>>>>>  -I/usr/local/include -DPROJ_H_API
> >>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
> >>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o
> ogr_proj.o
> >>>>>>>>  ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
> >>>>>>>>  ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared
> in
> >>>  this
> >>>>>>>>  scope
> >>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>>>>           ^~~~~~~~~~~~~~~~~
> >>>>>>>>  ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
> >>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
> >>>>>>>>           ^~~~~~~~~~~~~~~~~
> >>>>>>>>           OSRProjVersion
> >>>>>>>>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
> >>>>>  failed
> >>>>>>>>  make: *** [ogr_proj.o] Error 1
> >>>>>>>>  ERROR: compilation failed for package ‘rgdal’
> >>>>>>>>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
> >>>>>>>>
> >>>>>>>>  The downloaded source packages are in
> >>>>>>>>  ‘/tmp/RtmpNkdFOf/downloaded_packages’
> >>>>>>>>  Warning message:
> >>>>>>>>  In install.packages("rgdal") :
> >>>>>>>>    installation of package ‘rgdal’ had non-zero exit status
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>  --
> >>>>>>>>  Thomas E Adams, III
> >>>>>>>>  1724 Sage Lane
> >>>>>>>>  Blacksburg, VA 24060
> >>>>>>>>  [hidden email] (personal)
> >>>>>>>>  [hidden email] (work)
> >>>>>>>>
> >>>>>>>>  1 (513) 739-9512 (cell)
> >>>>>>>>
> >>>>>>>>          [[alternative HTML version deleted]]
> >>>>>>>>
> >>>>>>>>  _______________________________________________
> >>>>>>>>  R-sig-Geo mailing list
> >>>>>>>>  [hidden email]
> >>>>>>>>  https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >>>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>
> >>>>>  --
> >>>>>  Roger Bivand
> >>>>>  Department of Economics, Norwegian School of Economics,
> >>>>>  Helleveien 30, N-5045 Bergen, Norway.
> >>>>>  voice: +47 55 95 93 55; e-mail: [hidden email]
> >>>>>  https://orcid.org/0000-0003-2392-6140
> >>>>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
> >>>>
> >>>>
> >>>>
> >>>>
> >>>
> >>>  --
> >>>  Roger Bivand
> >>>  Department of Economics, Norwegian School of Economics,
> >>>  Helleveien 30, N-5045 Bergen, Norway.
> >>>  voice: +47 55 95 93 55; e-mail: [hidden email]
> >>>  https://orcid.org/0000-0003-2392-6140
> >>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
> >>
> >>
> >>
> >>
> >
> >
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: [hidden email]
> https://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en



--
Thomas E Adams, III
1724 Sage Lane
Blacksburg, VA 24060
[hidden email] (personal)
[hidden email] (work)

1 (513) 739-9512 (cell)

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Re: Trouble installing rgdal

Roger Bivand
Administrator
The revisions needed to install on PROJ 6.1.0 and GDAL 3.0.0 involved a
compiled function that only entered PROJ in 6.2.0, another that only
entered GDAL in 3.0.1, and bugs in handling +proj=ob_tran in PROJ 6.0.0,
6.1.0 and 6.1.1. Revision 1031 covering these and letting rgdal install on
these (oldish) versions has been committed to R-Forge, and when the build
completes will answer the intial question. The package installed using the
old PROJ API because that choice also avoided the problem with GDAL, but
didn't advance to being able to use WKT2 instead of Proj4 strings
internally (with sp >= 1.4). In any case, GDAL 3.0.4 and PROJ 6.3.1 or
later is a safer choice, but at least now those obliged to stay with
earlier GDAL 3 and PROJ 6 should be covered.

Roger

On Sat, 4 Jul 2020, Thomas Adams wrote:

> Hi Roger!
>
> I updated GDAL and PROJ to 3.0.4 and 6.3.1, respectively... the install
> worked perfectly using:
>
> sudo R CMD INSTALL rgdal_1.5-13.tar.gz
>
> Thank you so much!
>
> Best,
> Tom
>
> On Fri, Jul 3, 2020 at 11:24 AM Roger Bivand <[hidden email]> wrote:
>
>> On Fri, 3 Jul 2020, Roger Bivand wrote:
>>
>>> On Fri, 3 Jul 2020, Thomas Adams wrote:
>>>
>>>>  Hi Roger,
>>>>
>>>>  I just tried re-installing withou using the argument and got this:
>>>
>>> Very useful, thanks - painful but another case of staying too close to
>> the
>>> front. proj_create_crs_to_crs_from_pj() was new in PROJ 6.2.0. I'll try
>> to
>>> adapt to accommodate older PROJ 6.
>>
>> Re-creating a GDAL 3.0.0 with PROJ 6.1.0 platform has thrown up another
>> issue which which I'm struggling. I'll try to resolve it, but until then
>> advice would be to update GDAL and PROJ to 3.0.4 and 6.3.1, which we know
>> work (those are the versions in the CRAN Windows binary).
>>
>> Roger
>>
>>>
>>> Roger
>>>
>>>>
>>>>  teaiii@teaiii-Leopard-WS:~$ sudo R CMD INSTALL rgdal_1.5-13.tar.gz
>>>>  * installing to library
>> ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
>>>>  * installing *source* package ‘rgdal’ ...
>>>>  ** using staged installation
>>>> configure:  R_HOME: /usr/local/lib/R
>>>> configure:  CC: gcc
>>>> configure:  CXX: g++ -std=gnu++11
>>>> configure:  CFLAGS: -g -O2
>>>> configure:  CPPFLAGS: -I/usr/local/include
>>>> configure:  CXXFLAGS: -g -O2
>>>> configure: LDFLAGS:  -L/usr/local/lib
>>>> configure: LDFLAGS:  -L/usr/local/lib
>>>> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
>>>> configure:  CXX is: g++ -std=gnu++11
>>>> configure:  C++11 support available
>>>> configure:  rgdal: 1.5-13
>>>>  checking for /usr/bin/svnversion... yes
>>>>  cat: inst/SVN_VERSION: No such file or directory
>>>> configure:  svn revision:
>>>>  checking for gdal-config... /usr/local/bin/gdal-config
>>>>  checking gdal-config usability... yes
>>>> configure:  GDAL: 3.0.0
>>>>  checking GDAL version >= 1.11.4... yes
>>>>  checking GDAL version <= 2.5 or >= 3.0... yes
>>>>  checking GDAL: linking with --libs only... yes
>>>>  checking GDAL: gdal-config data directory readable... yes
>>>>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes
>>>> configure:  pkg-config proj exists, will use it
>>>> configure:  PROJ version: 6.1.0
>>>> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
>>>> configure:  PROJ LIBS: -L/usr/local/lib -lproj
>>>>  checking PROJ header API:... yes
>>>>  checking whether the C++ compiler works... yes
>>>>  checking for C++ compiler default output file name... a.out
>>>>  checking for suffix of executables...
>>>>  checking whether we are cross compiling... no
>>>>  checking for suffix of object files... o
>>>>  checking whether we are using the GNU C++ compiler... yes
>>>>  checking whether g++ -std=gnu++11 accepts -g... yes
>>>>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
>>>>  checking for grep that handles long lines and -e... /bin/grep
>>>>  checking for egrep... /bin/grep -E
>>>>  checking for ANSI C header files... yes
>>>>  checking for sys/types.h... yes
>>>>  checking for sys/stat.h... yes
>>>>  checking for stdlib.h... yes
>>>>  checking for string.h... yes
>>>>  checking for memory.h... yes
>>>>  checking for strings.h... yes
>>>>  checking for inttypes.h... yes
>>>>  checking for stdint.h... yes
>>>>  checking for unistd.h... yes
>>>>  checking proj.h usability... yes
>>>>  checking proj.h presence... yes
>>>>  checking for proj.h... yes
>>>>  checking for proj_context_create in -lproj... yes
>>>>  checking Using GDAL < 3 with PROJ >= 6... no
>>>>  checking PROJ version >= 4.8.0... yes
>>>>  checking PROJ: proj.db found and readable... yes
>>>> configure:  Package CPP flags:  -I/usr/local/include
>> -I/usr/local/include
>>>>  -DPROJ_H_API
>>>> configure:  Package LIBS:  -L/usr/local/lib -lgdal -L/usr/local/lib
>> -lproj
>>>> configure:  creating ./config.status
>>>>  config.status: creating src/Makevars
>>>>  ** libs
>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>  -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o OGR_write.o
>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>  -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
>>>>  gdal-bindings.o
>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>  -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o ogr_geom.o
>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
>> ogr_polygons.o
>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>  -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o ogr_proj.o
>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>  -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogrdrivers.cpp -o ogrdrivers.o
>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>  -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogrsource.cpp -o ogrsource.o
>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>  -I/usr/local/include
>>>>  -I/usr/local/include -DPROJ_H_API
>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>  -I/usr/local/include   -fpic  -g -O2  -c proj6.cpp -o proj6.o
>>>>  proj6.cpp: In function ‘SEXPREC* transform_ng(SEXP, SEXP, SEXP, SEXP,
>>>>  SEXP,
>>>>  SEXP, SEXP)’:
>>>>  proj6.cpp:521:29: error: ‘proj_create_crs_to_crs_from_pj’ was not
>> declared
>>>>  in this scope
>>>>          if ((pj_transform =
>> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>>>  source_crs,
>>>>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>>  proj6.cpp:521:29: note: suggested alternative: ‘proj_create_crs_to_crs’
>>>>          if ((pj_transform =
>> proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>>>  source_crs,
>>>>                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>>                              proj_create_crs_to_crs
>>>>  proj6.cpp: In function ‘SEXPREC* project_ng_coordOp(SEXP, SEXP)’:
>>>>  proj6.cpp:704:33: error: ‘proj_create_crs_to_crs_from_pj’ was not
>> declared
>>>>  in this scope
>>>>      if (use_inv) pj_transform =
>>>>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
>>>>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>>  proj6.cpp:704:33: note: suggested alternative: ‘proj_create_crs_to_crs’
>>>>      if (use_inv) pj_transform =
>>>>  proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX, target_crs,
>>>>                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>>                                  proj_create_crs_to_crs
>>>>  proj6.cpp:706:25: error: ‘proj_create_crs_to_crs_from_pj’ was not
>> declared
>>>>  in this scope
>>>>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>>>  source_crs,
>>>>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>>  proj6.cpp:706:25: note: suggested alternative: ‘proj_create_crs_to_crs’
>>>>      else pj_transform = proj_create_crs_to_crs_from_pj(PJ_DEFAULT_CTX,
>>>>  source_crs,
>>>>                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>>                          proj_create_crs_to_crs
>>>>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'proj6.o' failed
>>>>  make: *** [proj6.o] Error 1
>>>>  ERROR: compilation failed for package ‘rgdal’
>>>>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>>>  * restoring previous
>>>>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>>>
>>>>  On Fri, Jul 3, 2020 at 5:45 AM Roger Bivand <[hidden email]>
>> wrote:
>>>>
>>>>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
>>>>>
>>>>>>  Roger,
>>>>>>
>>>>>>  Thank you so much; after downloading the *.tar.gz file, the that did
>> the
>>>>>>  trick, using:
>>>>>>
>>>>>>  sudo R CMD INSTALL --configure-args=--with-proj_api="proj_api.h"
>>>>>>  rgdal_1.5-13.tar.gz
>>>>>
>>>>>  Since you have GDAL: 3.0.0 and PROJ version: 6.1.0, you can drop
>>>>>  --configure-args=--with-proj_api="proj_api.h", which is only needed if
>>>>>  GDAL < 3 and PROJ >= 6. I'm uncertain how stable a system will be if
>> GDAL
>>>>>>  = 3 && PROJ >= 6 with this configure argument, as it is only a
>>>>>  work-around for systems with GDAL < 3 and PROJ >= 6, and onnly tested
>> in
>>>>>  that setting.
>>>>>
>>>>>  Thanks for reporting back!
>>>>>
>>>>>  Roger
>>>>>
>>>>>>
>>>>>>  Best regards!
>>>>>>  Tom
>>>>>>
>>>>>>
>>>>>>  On Thu, Jul 2, 2020 at 3:15 PM Roger Bivand <[hidden email]>
>> wrote:
>>>>>>
>>>>>>>  On Thu, 2 Jul 2020, Thomas Adams wrote:
>>>>>>>
>>>>>>>>  Hi Bennet!
>>>>>>>>
>>>>>>>>  Thank you for your help, but I get the same error...
>>>>>>>
>>>>>>>  Tom,
>>>>>>>
>>>>>>>  Once rgdal revision 1029 completes building (check first) on:
>>>>>>>
>>>>>>>  https://r-forge.r-project.org/R/?group_id=884
>>>>>>>
>>>>>>>  please re-try. The missing function is not in the GDAL 3.0.0
>> headers,
>>>>>  but
>>>>>>>  is in the 3.0.1 headers. I've modified the check so as not to try
>> for
>>>>>  just
>>>>>>>>  = 3 to >= 3.0.1.
>>>>>>>
>>>>>>>  Roger
>>>>>>>
>>>>>>>>
>>>>>>>>  Tom
>>>>>>>>
>>>>>>>>  On Thu, Jul 2, 2020 at 2:01 PM Bennet Fauber <[hidden email]>
>> wrote:
>>>>>>>>
>>>>>>>>>  You might try this
>>>>>>>>>
>>>>>>>>>  install.packages("rgdal", "/sw/arcts/centos7/Rgeospatial/062020",
>>>>>>>>>  repos="http://R-Forge.R-project.org")
>>>>>>>>>
>>>>>>>>>  as there have been recent patches to rgdal that might help that
>> have
>>>>>>>>>  been incorporated there.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>  On Thu, Jul 2, 2020 at 1:47 PM Thomas Adams <[hidden email]>
>> wrote:
>>>>>>>>>>
>>>>>>>>>>  Hi all,
>>>>>>>>>>
>>>>>>>>>>  I have searched the internet and have spent a few days trying to
>> get
>>>>>  to
>>>>>>>>>  the
>>>>>>>>>>  problem when I try to install rgdal into my Ubuntu 18.04 system.
>> I
>>>>>  have
>>>>>>>>>>  done this many times previously, but cannot seem to track down
>> what
>>>>>>>>>>  I
>>>>>>>  am
>>>>>>>>>>  doing wrong now. I have tried a forced install from sources with
>> and
>>>>>>>>>>  without dependencies. Below is what I get. Any help is
>> appreciated.
>>>>>>>>>>
>>>>>>>>>>  Tom
>>>>>>>>>>
>>>>>>>>>>>  install.packages("rgdal")
>>>>>>>>>>  Installing package into
>>>>>>>  ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0’
>>>>>>>>>>  (as ‘lib’ is unspecified)
>>>>>>>>>>  trying URL '
>> https://cran.case.edu/src/contrib/rgdal_1.5-12.tar.gz'
>>>>>>>>>>  Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
>>>>>>>>>>  ==================================================
>>>>>>>>>>  downloaded 2.2 MB
>>>>>>>>>>
>>>>>>>>>>  * installing *source* package ‘rgdal’ ...
>>>>>>>>>>  ** package ‘rgdal’ successfully unpacked and MD5 sums checked
>>>>>>>>>>  ** using staged installation
>>>>>>>>>> configure:  R_HOME: /usr/local/lib/R
>>>>>>>>>> configure:  CC: gcc
>>>>>>>>>> configure:  CXX: g++ -std=gnu++11
>>>>>>>>>> configure:  CXX11 is: g++, CXX11STD is: -std=gnu++11
>>>>>>>>>> configure:  CXX is: g++ -std=gnu++11
>>>>>>>>>> configure:  C++11 support available
>>>>>>>>>> configure:  rgdal: 1.5-12
>>>>>>>>>>  checking for /usr/bin/svnversion... yes
>>>>>>>>>> configure:  svn revision: 1018
>>>>>>>>>>  checking for gdal-config... /usr/local/bin/gdal-config
>>>>>>>>>>  checking gdal-config usability... yes
>>>>>>>>>> configure:  GDAL: 3.0.0
>>>>>>>>>>  checking GDAL version >= 1.11.4... yes
>>>>>>>>>>  checking GDAL version <= 2.5 or >= 3.0... yes
>>>>>>>>>>  checking GDAL: linking with --libs only... yes
>>>>>>>>>>  checking GDAL: gdal-config data directory readable... yes
>>>>>>>>>>  checking GDAL: /usr/local/share/gdal/stateplane.csv readable...
>> yes
>>>>>>>>>> configure:  pkg-config proj exists, will use it
>>>>>>>>>> configure:  PROJ version: 6.1.0
>>>>>>>>>> configure:  PROJ CPP flags: -DPROJ_H_API -I/usr/local/include
>>>>>>>>>> configure:  PROJ LIBS: -L/usr/local/lib -lproj
>>>>>>>>>>  checking PROJ header API:... yes
>>>>>>>>>>  checking whether the C++ compiler works... yes
>>>>>>>>>>  checking for C++ compiler default output file name... a.out
>>>>>>>>>>  checking for suffix of executables...
>>>>>>>>>>  checking whether we are cross compiling... no
>>>>>>>>>>  checking for suffix of object files... o
>>>>>>>>>>  checking whether we are using the GNU C++ compiler... yes
>>>>>>>>>>  checking whether g++ -std=gnu++11 accepts -g... yes
>>>>>>>>>>  checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
>>>>>>>>>>  checking for grep that handles long lines and -e... /bin/grep
>>>>>>>>>>  checking for egrep... /bin/grep -E
>>>>>>>>>>  checking for ANSI C header files... yes
>>>>>>>>>>  checking for sys/types.h... yes
>>>>>>>>>>  checking for sys/stat.h... yes
>>>>>>>>>>  checking for stdlib.h... yes
>>>>>>>>>>  checking for string.h... yes
>>>>>>>>>>  checking for memory.h... yes
>>>>>>>>>>  checking for strings.h... yes
>>>>>>>>>>  checking for inttypes.h... yes
>>>>>>>>>>  checking for stdint.h... yes
>>>>>>>>>>  checking for unistd.h... yes
>>>>>>>>>>  checking proj.h usability... yes
>>>>>>>>>>  checking proj.h presence... yes
>>>>>>>>>>  checking for proj.h... yes
>>>>>>>>>>  checking for proj_context_create in -lproj... yes
>>>>>>>>>>  checking Using GDAL < 3 with PROJ >= 6... no
>>>>>>>>>>  checking PROJ version >= 4.8.0... yes
>>>>>>>>>>  checking PROJ: proj.db found and readable... yes
>>>>>>>>>> configure:  Package CPP flags:  -I/usr/local/include
>>>>>>>  -I/usr/local/include
>>>>>>>>>>  -DPROJ_H_API
>>>>>>>>>> configure:  Package LIBS:  -L/usr/local/lib -lgdal
>> -L/usr/local/lib
>>>>>>>  -lproj
>>>>>>>>>> configure:  creating ./config.status
>>>>>>>>>>  config.status: creating src/Makevars
>>>>>>>>>>  ** libs
>>>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>>>  -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c OGR_write.cpp -o
>>>>>>>>>>  OGR_write.o
>>>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>>>  -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c gdal-bindings.cpp -o
>>>>>>>>>>  gdal-bindings.o
>>>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
>>>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c inverser.c -o inverser.o
>>>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c local_stubs.c -o
>>>>>  local_stubs.o
>>>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>>>  -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_geom.cpp -o
>> ogr_geom.o
>>>>>>>>>>  gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_polygons.c -o
>>>>>>>  ogr_polygons.o
>>>>>>>>>>  g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
>>>>>>>>>  -I/usr/local/include
>>>>>>>>>>  -I/usr/local/include -DPROJ_H_API
>>>>>>>>>>  -I'/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/sp/include'
>>>>>>>>>>  -I/usr/local/include   -fpic  -g -O2  -c ogr_proj.cpp -o
>> ogr_proj.o
>>>>>>>>>>  ogr_proj.cpp: In function ‘SEXPREC* R_GDAL_OSR_PROJ()’:
>>>>>>>>>>  ogr_proj.cpp:163:9: error: ‘OSRGetPROJVersion’ was not declared
>> in
>>>>>  this
>>>>>>>>>>  scope
>>>>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>>>>>>           ^~~~~~~~~~~~~~~~~
>>>>>>>>>>  ogr_proj.cpp:163:9: note: suggested alternative: ‘OSRProjVersion’
>>>>>>>>>>           OSRGetPROJVersion(&pnMajor, &pnMinor, &pnPatch);
>>>>>>>>>>           ^~~~~~~~~~~~~~~~~
>>>>>>>>>>           OSRProjVersion
>>>>>>>>>>  /usr/local/lib/R/etc/Makeconf:176: recipe for target 'ogr_proj.o'
>>>>>>>  failed
>>>>>>>>>>  make: *** [ogr_proj.o] Error 1
>>>>>>>>>>  ERROR: compilation failed for package ‘rgdal’
>>>>>>>>>>  * removing ‘/home/teaiii/R/x86_64-pc-linux-gnu-library/4.0/rgdal’
>>>>>>>>>>
>>>>>>>>>>  The downloaded source packages are in
>>>>>>>>>>  ‘/tmp/RtmpNkdFOf/downloaded_packages’
>>>>>>>>>>  Warning message:
>>>>>>>>>>  In install.packages("rgdal") :
>>>>>>>>>>    installation of package ‘rgdal’ had non-zero exit status
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>  --
>>>>>>>>>>  Thomas E Adams, III
>>>>>>>>>>  1724 Sage Lane
>>>>>>>>>>  Blacksburg, VA 24060
>>>>>>>>>>  [hidden email] (personal)
>>>>>>>>>>  [hidden email] (work)
>>>>>>>>>>
>>>>>>>>>>  1 (513) 739-9512 (cell)
>>>>>>>>>>
>>>>>>>>>>          [[alternative HTML version deleted]]
>>>>>>>>>>
>>>>>>>>>>  _______________________________________________
>>>>>>>>>>  R-sig-Geo mailing list
>>>>>>>>>>  [hidden email]
>>>>>>>>>>  https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>  --
>>>>>>>  Roger Bivand
>>>>>>>  Department of Economics, Norwegian School of Economics,
>>>>>>>  Helleveien 30, N-5045 Bergen, Norway.
>>>>>>>  voice: +47 55 95 93 55; e-mail: [hidden email]
>>>>>>>  https://orcid.org/0000-0003-2392-6140
>>>>>>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>  --
>>>>>  Roger Bivand
>>>>>  Department of Economics, Norwegian School of Economics,
>>>>>  Helleveien 30, N-5045 Bergen, Norway.
>>>>>  voice: +47 55 95 93 55; e-mail: [hidden email]
>>>>>  https://orcid.org/0000-0003-2392-6140
>>>>>  https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>
>> --
>> Roger Bivand
>> Department of Economics, Norwegian School of Economics,
>> Helleveien 30, N-5045 Bergen, Norway.
>> voice: +47 55 95 93 55; e-mail: [hidden email]
>> https://orcid.org/0000-0003-2392-6140
>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>
>
>
>
--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: [hidden email]
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
_______________________________________________
R-sig-Geo mailing list
[hidden email]
https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Roger Bivand
Department of Economics
Norwegian School of Economics
Helleveien 30
N-5045 Bergen, Norway